Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C13
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   129   6e-31
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    37   0.003
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   3.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   7.8  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  129 bits (311), Expect = 6e-31
 Identities = 64/151 (42%), Positives = 98/151 (64%), Gaps = 10/151 (6%)
 Frame = -1

Query: 855 YXAVEEVHDDGTPTSRTFEHVPSEIXXXXXXXXXXEHLLRDIKDTTVGSLSQRITNQLLG 676
           Y A++E+ DDG+ +SRTF H+PS I          EHLLRD +D +VG+L+ R+T Q   
Sbjct: 145 YFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQS 204

Query: 675 LKGLHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDN--------- 523
           L+GL  +LTEI DYL +V  G LP+NH I+ +LQ +FNLLP+I +   +           
Sbjct: 205 LQGLGQRLTEIADYLRKVVDGQLPINHAILAELQSVFNLLPNIFSGPVVSEQALESEAQR 264

Query: 522 -LYVKTNDQSLVVYLAALVRSIIALHNLINN 433
              V +NDQ + +Y++++VR++IALH+L+++
Sbjct: 265 AFNVNSNDQLMSIYISSIVRAVIALHDLLDS 295


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = -1

Query: 666 LHSQLTEIRDYLVQVGQGSLPMNHQIIYQLQDIFNLLPDIANDNFIDNLYVKTNDQSLVV 487
           L S +  + DY+  V  GS P N  +   L   F+L+P +   +F         D  +VV
Sbjct: 223 LLSMIERVSDYVQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVV 282

Query: 486 YLAALVRSIIALHNLIN 436
           YLA  +R+ + + + +N
Sbjct: 283 YLANTLRTQVDIASRLN 299


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -1

Query: 597 HQIIYQLQDIFNLLPDIANDNFIDNLYVKTN---DQSLVVYLAALVRSIIAL 451
           H + Y  + + N+   IA ++ + +L +K N     S++V+ AA+VRS IAL
Sbjct: 130 HLVYYMSRPLSNIFGLIATNHSL-SLLLKNNYYGSISILVFAAAIVRSEIAL 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 233  FLSLFNAPRFLMSSEFCTFVFSILLK*VTLFXPWTCACKFLKN 105
            FLS     R+++S  F  F  S +L  +T F   T AC  +++
Sbjct: 1986 FLSRVVQARYILSLPFFFFGISFILVAITHFFQKTTACSVIQH 2028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,666
Number of Sequences: 5004
Number of extensions: 45669
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)