Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_C10
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.009
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 30 0.58
02_01_0490 + 3541056-3542276 29 1.8
02_01_0018 + 119890-120238,120331-120424,120518-121529 28 2.3
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 28 3.1
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 28 3.1
06_01_0810 + 6111962-6112507 27 4.1
02_05_0388 + 28541751-28541820,28541912-28542054,28542199-285422... 27 4.1
10_08_0689 + 19912040-19912186,19912483-19912548 27 5.4
08_02_1334 - 26224546-26225337 27 5.4
08_02_0828 - 21596570-21597337 27 5.4
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 27 5.4
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 5.4
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 7.1
11_06_0416 + 23307984-23308281,23310083-23310900 26 9.4
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 26 9.4
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 288 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 160
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 30.3 bits (65), Expect = 0.58
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 166 GRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAF 297
GRH A++ VFN+ + L +++ GP DAG + S T +
Sbjct: 257 GRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299
>02_01_0490 + 3541056-3542276
Length = 406
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = -3
Query: 287 TLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMCLPSSGGPFRAFWPSTRPIAPL 108
T SA S P +T T +T + S S+ L+ L +GG S +APL
Sbjct: 142 TKPSASTSASP--STATAATPSRSSNSSAARSLK--LLLLQRNGGRASGAAASDLSVAPL 197
Query: 107 LRTSPKAESALT 72
LR S +E++L+
Sbjct: 198 LRDSSDSEASLS 209
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 88 ALGDVR--RSGAIGLVEGQNALNGPPEDGRHMRQA 186
ALGD+ S +I L+E Q+ L PP + R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289
>07_03_1291 + 25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 254 WSTTMTCSTARKCSVRELKTSISACLMC 171
W++ +C TA KC + K S+ C C
Sbjct: 1306 WTSFYSCLTAVKCGKKSFKESLVRCESC 1333
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 349 HDEVANRCVATRRCGDRGMRSHFRRHQR 266
H++ +R V CG + ++ +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432
>06_01_0810 + 6111962-6112507
Length = 181
Score = 27.5 bits (58), Expect = 4.1
Identities = 22/65 (33%), Positives = 25/65 (38%)
Frame = +1
Query: 166 GRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSGE*QHNDLQLH 345
G MRQ E T VL D+ + +E TA RSG QLH
Sbjct: 90 GMLMRQEEQR---ETTATAATVLGAAGHDKKEVPPAEEEKKTA---RRSGFWARLQQQLH 143
Query: 346 HGKWH 360
HG WH
Sbjct: 144 HGSWH 148
>02_05_0388 +
28541751-28541820,28541912-28542054,28542199-28542248,
28543087-28543210,28543765-28543770
Length = 130
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 281 SSAPASIGPWSTTM--TCSTARKCSVRELKTSISACLMCLPSSG 156
SS ASIGP T KC EL + S+ L+CLPS G
Sbjct: 3 SSTAASIGPPQPPPPPTSPEEEKCLNLELWHACSSPLVCLPSVG 46
>10_08_0689 + 19912040-19912186,19912483-19912548
Length = 70
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 206 ELKTSISACLMCLPSSGGPFRAFWPSTRPIAPLLRTSPKAESALTS 69
EL TS+SA M L ++ +RA S+RP+ P + + E +T+
Sbjct: 4 ELDTSLSASGMTLLTAWVSYRANLASSRPLTPGIFSDRLLERPMTN 49
>08_02_1334 - 26224546-26225337
Length = 263
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 293 AVTLSSAPASIGPWSTTMTCSTARKCSVREL 201
+VTL+ A++GP T + A C++R+L
Sbjct: 9 SVTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>08_02_0828 - 21596570-21597337
Length = 255
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 141 CPEWTSRRWKAHEAS*NGGFQLSYGTFSSCTARHGGRPRAY*RWCRRKCDRIPRS 305
C RW AH+ GG S T S + GR + RW K P S
Sbjct: 89 CRADACERWDAHKNKKAGGSAASSSTSSRASGGSPGRADSCERWDAHKTPGSPAS 143
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 203 LKTSISACLMCLPSSGGPFRA 141
LK++ +ACL C SS P+RA
Sbjct: 278 LKSAFAACLKCTHSSAEPWRA 298
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 291 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 169
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 270 SVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 163
S N PL+Y H SS + K +ENL SL V +
Sbjct: 1315 SSNIPLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +1
Query: 145 LNGPPEDGRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGP-IDAGADESVTAFHDH 306
L GP RH + + V + F A+LH + D P +D D V A H
Sbjct: 230 LFGPMAMSRHNNEETIRVHDMEPRVFEAMLHFIYNDSLPEVDDDDDGEVAAMAQH 284
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -2
Query: 288 HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 160
+T + T P +HH Q S + F+ V + + + PHVPS F
Sbjct: 87 YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,756,873
Number of Sequences: 37544
Number of extensions: 256391
Number of successful extensions: 724
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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