Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C10
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    29   1.6  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   2.1  
U64833-10|AAB04821.2|  427|Caenorhabditis elegans Hypothetical p...    28   2.1  
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   3.6  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   4.8  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical p...    26   8.4  
Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    26   8.4  
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    26   8.4  

>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 200 KTSISACLMCLPSSGGPFRAFWPSTRPIAPLL--RTSPKAESALTSS 66
           K  +S C +C   SGG   +F P+TR IA L   R  P A+   T S
Sbjct: 307 KYMLSVCSVCA-LSGGVLASFLPATRVIAALCHDRLIPYAKDTSTKS 352


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 120  RSCRRPECPEWTSRRWKAHEAS*NGGFQLSY 212
            R C R  CP W    W     S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 120  RSCRRPECPEWTSRRWKAHEAS*NGGFQLSY 212
            R C R  CP W    W     S +GG ++ +
Sbjct: 1069 RECNRIPCPRWVYGHWSECSRSCDGGVKMRH 1099


>U64833-10|AAB04821.2|  427|Caenorhabditis elegans Hypothetical
           protein B0507.2 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 254 WSTTMTCSTARKCSVRELKTSISACLMCLPSSGGPFR 144
           W T    S A K  VRE  +    CL CL  +GG F+
Sbjct: 131 WLTKHAASMAGKDEVRE--SDAKECLQCLRQAGGMFQ 165


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -2

Query: 303 IVECGHTFVGTSVNRPL--VYHHDVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAF 130
           I++ GH FVG  V+RP+  +   D    S  F    +++   +P  P  F  +I      
Sbjct: 71  ILDAGHMFVGVDVSRPMLEIARQDEDLESGDFIH--QDMGLGMPFRPGSFDGAISISAIQ 128

Query: 129 DKTYSTASANITQGGIGFNFVNLRMKSERGSKIHYDVY 16
              ++ AS    +  + F F +L     RGS+  +  Y
Sbjct: 129 WLCHANASDENPRKRLLFFFQSLYGCLGRGSRAVFQFY 166


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 303  IVECGHTFVGTSVNRPLVYHHDVQYSSKMFRKR 205
            ++E G   V   V + + Y +++ +  KMFRK+
Sbjct: 2287 VIEIGRLMVEEDVRKWMEYQYEMTFVKKMFRKK 2319


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 282 FVGTSVNRPLVYHHDVQYSSK 220
           F  + +NR  VYH DV YS K
Sbjct: 423 FTESELNRHAVYHSDVMYSCK 443


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 120 RSCRRPECPEWTSRRW 167
           R C R +CP W + +W
Sbjct: 531 RPCHREDCPRWEASQW 546


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 120 RSCRRPECPEWTSRRW 167
           R C R +CP W + +W
Sbjct: 865 RPCHREDCPRWEASQW 880


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 203
           ++C R  CPEW +  W A        FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 203
           ++C R  CPEW +  W A        FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 120 RSCRRPECPEWTSRRWKAHEAS*NGGFQ 203
           ++C R  CPEW +  W A        FQ
Sbjct: 455 QTCNRFACPEWQAGPWSACSEKCGDAFQ 482


>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 300 RSPQRRVATQRFATSSWQMALNNC 371
           RSP RR  +++   + WQ ++N C
Sbjct: 310 RSPYRRTYSKKNQVAEWQSSMNYC 333


>Z74030-18|CAA98448.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 157 PEDGRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSG 315
           P++ +  +  + E   +L+ H   +  +   D G + +GAD     F D RSG
Sbjct: 372 PDNIKQWKLPKGEFMQNLSGHNAIINTLSSNDDGVVVSGADNGSLCFWDWRSG 424


>Z73970-6|CAA98247.1|  494|Caenorhabditis elegans Hypothetical
           protein D1054.15 protein.
          Length = 494

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 157 PEDGRHMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVTAFHDHRSG 315
           P++ +  +  + E   +L+ H   +  +   D G + +GAD     F D RSG
Sbjct: 372 PDNIKQWKLPKGEFMQNLSGHNAIINTLSSNDDGVVVSGADNGSLCFWDWRSG 424


>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 90  GGIGFNFVNLRMKSERGSKIHY 25
           GG+GF FV  + K+ER  K  Y
Sbjct: 326 GGLGFGFVYFQKKNERQRKRFY 347


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 240 DVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANI 97
           D+Q  ++M   +V     S    P  F     G +AFDK YS A+A +
Sbjct: 634 DLQKVTQMAYSQVVKFGMSEKVGPLSFETPAPGEMAFDKPYSEATAQL 681


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,151
Number of Sequences: 27780
Number of extensions: 199555
Number of successful extensions: 532
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)