Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C10
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.95 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   3.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.7  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -2

Query: 219 MFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGFNFVNLRMKSERG 40
           M RK++  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520

Query: 39  S 37
           +
Sbjct: 521 T 521


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 137 WPSTRPIAPLL 105
           +PS RP APLL
Sbjct: 877 FPSVRPFAPLL 887


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 232 VQLENVP*ES*KPPFQLASCAFHLREVHSGHSGLRQ 125
           + LEN P ++ + P Q  S  +  R+V    +  RQ
Sbjct: 132 MNLENFPMDTQRCPLQFGSFGYTKRDVIYKWNSARQ 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 163 LREVHSGHSGLR 128
           LRE+H  ++GLR
Sbjct: 287 LREIHLAYNGLR 298


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +3

Query: 99  CSQKRCYRSCRRPEC--PEW 152
           C  K+C     RPEC  PE+
Sbjct: 242 CRLKKCLTVGMRPECVVPEY 261


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
 Frame = +3

Query: 99  CSQKRCYRSCRRPEC--PEW 152
           C  K+C     RPEC  PE+
Sbjct: 39  CRLKKCLTVGMRPECMVPEY 58


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/28 (25%), Positives = 11/28 (39%)
 Frame = -3

Query: 236 CSTARKCSVRELKTSISACLMCLPSSGG 153
           C     C   ++ +     L CL  +GG
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHNGG 249


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/28 (25%), Positives = 11/28 (39%)
 Frame = -3

Query: 236 CSTARKCSVRELKTSISACLMCLPSSGG 153
           C     C   ++ +     L CL  +GG
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHNGG 249


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/28 (25%), Positives = 11/28 (39%)
 Frame = -3

Query: 236 CSTARKCSVRELKTSISACLMCLPSSGG 153
           C     C   ++ +     L CL  +GG
Sbjct: 222 CEKPEVCDYPDIYSGYEGALRCLAHNGG 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,975
Number of Sequences: 438
Number of extensions: 2179
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)