Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_C09
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 29 1.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 3.6
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 3.6
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 27 4.7
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 4.7
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.3
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 26 8.3
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 26 8.3
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 26 8.3
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 558 TRPMYKGSPSSVSPPGNAPG-GTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EG 734
T P S S + PPGN PG + P++ G P++ Y FP + PH + P +
Sbjct: 525 TAPSQPASLSLLGPPGNTPGHRNVPPILKRSSIGTPSQQAY--FPDA--PHNCHSVP-QN 579
Query: 735 TSLP 746
+S P
Sbjct: 580 SSYP 583
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 274 KNSHENNPPSAFFCSKSNEPV*NMHYHEYI 363
+++H NNPP A SNE V + H EY+
Sbjct: 151 RSNHLNNPPEAPITEASNEYVYSFHL-EYV 179
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 561 RPMYKGSPSSVSPPGNAPGGTLDPLVGT 644
RP+ SPSS S +A G ++P VGT
Sbjct: 187 RPVLDRSPSSFSQSRSAVSGNMNPGVGT 214
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 543 LPSWRTRPMYKGSPSSVSPPGNAPGGTLD 629
LP RT Y+ +PSS NAP T +
Sbjct: 35 LPQDRTTSTYRATPSSADAGYNAPSSTFE 63
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 748 GSWHLREQHEPHTEALLSSPVLPQRRQEV 834
G HL+EQ + +S P+LP ++ E+
Sbjct: 98 GVKHLQEQSSKEIKNPISQPILPNKKDEI 126
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 470 ESKLLSPKRNVADAVRLLNLAGG 538
+S LLSP+ N D V L+++AGG
Sbjct: 318 QSFLLSPEENSLDDVLLVSIAGG 340
>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 133 CMXHRIYFIKQILHCVLLGXSYCAGTDLVWHLFI*YSAL 249
C+ HR+ +I HC+L +Y + F+ Y A+
Sbjct: 34 CVHHRVRYIYVPRHCLLRSLTYATTNFTKFSKFVYYLAI 72
>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 842 RSSTSWRRCGRTGLLRRASVCGSCCSRRCHDPW*TRSFSW 723
+S T RRCG+ + S C +CC + TRS++W
Sbjct: 14 KSHTICRRCGKRSFHIQKSTC-ACCG---YPAAKTRSYNW 49
>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 91
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 842 RSSTSWRRCGRTGLLRRASVCGSCCSRRCHDPW*TRSFSW 723
+S T RRCG+ + S C +CC + TRS++W
Sbjct: 14 KSHTICRRCGKRSFHIQKSTC-ACCG---YPAAKTRSYNW 49
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 858 GLMFQEVKYLLAPLWEDRTAQES-LCMWLVLFTKVPRSLVNSFLLMAALTF 709
GL +E + L+ E+R +S + W VL +V ++ +L AAL+F
Sbjct: 29 GLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAMCVVLILAAALSF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,535
Number of Sequences: 5004
Number of extensions: 79538
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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