Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_C09
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.5
Z78012-1|CAB01410.2| 329|Caenorhabditis elegans Hypothetical pr... 27 1.9
M74797-1|AAB88058.1| 329|Caenorhabditis elegans gut-specific cy... 27 1.9
Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 29 4.5
AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine re... 29 4.5
AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine re... 29 4.5
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical pr... 28 7.8
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.7 bits (66), Expect = 1.5
Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 576 GSPSSVSPPGNAPGG-TLDPLVGTQLFGPPTKIWY*GF-PCSIPPHGT*AQP*EGTSLPG 749
G+P S PP PGG P G +GPP GF P PP G P G + P
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPT----GFPPVGAPPPGAAGAP--GGN-PF 470
Query: 750 IVAPS*TARATYRGSPEQ 803
PS T YR SP Q
Sbjct: 471 ARGPSATG---YRQSPYQ 485
>Z78012-1|CAB01410.2| 329|Caenorhabditis elegans Hypothetical
protein C52E4.1 protein.
Length = 329
Score = 27.5 bits (58), Expect(2) = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 839 SSTSWRRCGRTGLLRRASVCGSC 771
S T W C L+R + CGSC
Sbjct: 91 SRTQWSECKSIKLIRDQATCGSC 113
Score = 21.4 bits (43), Expect(2) = 1.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Frame = -3
Query: 788 SVCGSCCSRRCHDPW*TRSFSW 723
S CGS C C + ++ W
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRW 166
>M74797-1|AAB88058.1| 329|Caenorhabditis elegans gut-specific
cysteine protease-1 protein.
Length = 329
Score = 27.5 bits (58), Expect(2) = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 839 SSTSWRRCGRTGLLRRASVCGSC 771
S T W C L+R + CGSC
Sbjct: 91 SRTQWSECKSIKLIRDQATCGSC 113
Score = 21.4 bits (43), Expect(2) = 1.9
Identities = 7/22 (31%), Positives = 10/22 (45%)
Frame = -3
Query: 788 SVCGSCCSRRCHDPW*TRSFSW 723
S CGS C C + ++ W
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRW 166
>Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical
protein F36D3.9 protein.
Length = 344
Score = 26.6 bits (56), Expect(2) = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 833 TSWRRCGRTGLLRRASVCGSC 771
T W +C L+R S CGSC
Sbjct: 109 TRWPQCKSMKLIREQSNCGSC 129
Score = 21.8 bits (44), Expect(2) = 2.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = -3
Query: 782 CGSCCSRRCHDPW*TRSFSWLRLRSM 705
CG C C + R+F W R +
Sbjct: 163 CGMSCGEGCDGGFPYRAFQWWARRGV 188
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 661 GGPNNWVPTSGSNVPPG--AFPGGETEDGEPLYIGRVRHEGSLTTGKVQQ 518
G P N P+ G+ PPG PGG DG+P G G++T QQ
Sbjct: 190 GAPGN-TPSGGAAGPPGPPGPPGGPGNDGQPGGPGNPGAPGAVTEVPGQQ 238
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 691 VQYHPMERKRSHEKERVYQGSWHLREQH-EPHTEALLSSPVLPQRRQEVLDLLK 849
VQ+ +E E YQ LRE + + H + L P L QRRQE+LD ++
Sbjct: 292 VQFENLEHIIGEEHHAEYQ---QLREDYRQAHVD--LIGPELEQRRQEILDRMR 340
>AF000299-3|AAW88403.1| 342|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform a protein.
Length = 342
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 774 VLFTKVPRSLVNSFLLMAALTFHGVVL 694
++FT + S+VNS+L+ + LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>AF000299-2|AAC47981.2| 324|Caenorhabditis elegans Serpentine
receptor, class z protein24, isoform b protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 774 VLFTKVPRSLVNSFLLMAALTFHGVVL 694
++FT + S+VNS+L+ + LT G++L
Sbjct: 94 IIFTVISTSVVNSWLIFSILTITGLIL 120
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = +3
Query: 576 GSPSSVSPPGNAPGGTLDPLVGTQLFGPPTKIWY*GFPCSIPPHGT*AQP*EGTSLPG 749
G P PPG+A G D G Q GPP + G P + P G P G LPG
Sbjct: 224 GPPGPGGPPGDAGGAGSDGAPGPQ--GPPGQD---GTPGNAGPDGQPGSP-GGPGLPG 275
>Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 245 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 361
+ E ++ RI+ KIIH L F P R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289
>Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 245 RCEKTSKLN*RIVM-KIIHHLLFFAPNQTSRYEICIIMNT 361
+ E ++ RI+ KIIH L F P R E+C I+ T
Sbjct: 250 QAEPVQRVQRRIIATKIIHKLALFLPPNEIRKELCPIVTT 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,809,853
Number of Sequences: 27780
Number of extensions: 472550
Number of successful extensions: 1296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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