Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C08
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 512 LKYNELAMRLPTGSTSMGPRY 450
           ++YN  A    TG+  MGP Y
Sbjct: 535 IQYNTRAENHQTGTAKMGPSY 555


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 413 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 562
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 413 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 562
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTV 263


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 413 EISAMRLHKICTGISDPYLYCQLAAS*RARCT*DRLSAIIPVMTHPILSV 562
           E+ A+R  K  T   +PYL      + R +     ++ IIP M    L+V
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFLTV 259


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 408 LERYQLCVCIRYAQVSRTHTCTASWQPHSELVVLET 515
           LER  L       Q S THT   +W+    + +L +
Sbjct: 482 LERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 517


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 408 LERYQLCVCIRYAQVSRTHTCTASWQPHSELVVLET 515
           LER  L       Q S THT   +W+    + +L +
Sbjct: 520 LERLNLIFMSSSLQWSSTHTLDVAWRRKVTIEILNS 555


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 490  IASSLYLRPAISNHPGHD 543
            + SSL+ RP+  N+P  D
Sbjct: 1901 LRSSLWSRPSTQNNPSSD 1918


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 490  IASSLYLRPAISNHPGHD 543
            + SSL+ RP+  N+P  D
Sbjct: 1897 LRSSLWSRPSTQNNPSSD 1914


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,797
Number of Sequences: 438
Number of extensions: 4456
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)