Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C07
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   5.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   5.0  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   6.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.7  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 99  SSFTNKQKDSSFILSEKKAIISGHWHKARX*RK 1
           SS  N Q D+   L E+K+ I   WH+    RK
Sbjct: 52  SSCVNCQIDNLHTLDERKSHIKSDWHRFNTKRK 84


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 522  PKYVKLQINYYKNGMYSNHNFIYIAN*DWKVPCLNLIEGKITGETTLVLLFQKLYHIFY* 701
            P  VK+ +N+ K       N  Y  N + +     L+E +      +  + +K Y  F  
Sbjct: 885  PSDVKVPVNWCKMSGTKKTNRYY--NDELRKKIKKLLEAEELHLAIMSRMQEKFYIRFDS 942

Query: 702  NFEIWLRFIEY 734
            N+E WL  I+Y
Sbjct: 943  NYEQWLALIKY 953


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +1

Query: 439 QYVNLRNISKMH*IQRAK*NNQKAF*FSQNMSNFKLIIIRMVCTAIIILYILLIRTG 609
           +++++R IS+      A+  ++ +F FS+  SN+  II  +V  A+I   +LLI  G
Sbjct: 34  EFLDVRRISRPRNFSEAQ--SRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIG 88


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 403 YIIH*KMLIEYSQYVNLR 456
           Y++H KM+IEY+Q  +LR
Sbjct: 439 YVMHEKMVIEYNQAPSLR 456


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 138 GFIFYDSIIYVKNSSFTNKQKDSSFILSEKKAIISGHW 25
           GF+    ++   NS    K+ DS +ILS  K +  G++
Sbjct: 751 GFLRTHCVVLTTNSLNVLKEADSIYILSNGKIVEKGNY 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,675
Number of Sequences: 5004
Number of extensions: 53054
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)