Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C06
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   226   2e-60
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  226 bits (553), Expect = 2e-60
 Identities = 114/230 (49%), Positives = 152/230 (66%), Gaps = 1/230 (0%)
 Frame = -2

Query: 695 GHPEVYILILPGXGIISHIISQERGXKETFXXXXXXXXXXXXXXXGFIV*AHHIFTVGID 516
           GHPEVYILI+P  G++SHII      K  F               G +V +HH+FTVG+D
Sbjct: 246 GHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLD 304

Query: 515 IDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVI 339
           +DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVI
Sbjct: 305 VDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVI 364

Query: 338 LANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFTI 159
           L+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +
Sbjct: 365 LSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWIL 423

Query: 158 FIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NIIASLGXYIALLSVII 9
           FIGVNI F PQHFLGL G+PRR  DYP++++  N ++S+G  I++LS+ +
Sbjct: 424 FIGVNIVFGPQHFLGLNGMPRRIPDYPEAFVGWNFVSSIGSVISILSLFL 473


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 210 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 82
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,846
Number of Sequences: 5004
Number of extensions: 31878
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)