Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C06
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine rece...    29   2.4  
AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U97009-2|AAC69029.3|  342|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 33 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 216 FIYRPFIKFLYTKNSIFYNIYWSK-YNIFSTTFFRFSWNTSTIFRLSRLIYFMKYNCFIR 40
           F Y  ++  L+   + F ++  S  Y  FS  F RF+ NTS I  L  + YF  +  F  
Sbjct: 107 FSYMSYVGILHLSLNSFISLMLSMIYRYFSIRFKRFTANTSII--LCIIGYFFPFLIFAS 164

Query: 39  XIYCAIISNNKIN 1
               AI S+   N
Sbjct: 165 CSNIAISSSLSFN 177


>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 168 FYNIYWSKYNIFSTTF----FRFSWNTSTIFRLSRLIYFMKYNCF 46
           F+NIYWS Y IF  TF        +    +F LS   YF+  N F
Sbjct: 11  FFNIYWSFYAIFGFTFQLTLIFLIFQKLPVF-LSNFKYFLVNNAF 54


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 222 ISFIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 88
           + F+YR +  F + +   F+N  W  + IF    F   W+ S  F
Sbjct: 111 VQFVYRYWAIF-HVRRLSFFNGIWILFWIFLAMMFGVDWSCSVYF 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,148,434
Number of Sequences: 27780
Number of extensions: 166873
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)