Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C04
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   5.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
 Frame = -3

Query: 248 MVDSIGYSYADDRQ*KTINSNV-------HNMQIKCDIVYVLGIPIEL 126
           +++ I  SY D+   K +N  V       HN++IK + +  LGIPIE+
Sbjct: 9   LLNKILGSYVDNLDTKQLNIGVWGGHVSLHNLRIKPEALDKLGIPIEI 56


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 117 LMLQFNWNAQHVNYVTFYLHVVYIAVYCFSLPIV 218
           ++L    N    NYV F++ V+     CF +P+V
Sbjct: 279 IILNSRKNLSLQNYVGFFVSVLDALFECFDVPVV 312


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 231 IFVRRRSAMKNNKQQCTQHANKM*HSLRAG 142
           IFV       NN+ Q ++H N   HS+R G
Sbjct: 27  IFVSWSLKKFNNENQTSEHFNTASHSVRTG 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,097
Number of Sequences: 5004
Number of extensions: 44648
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)