Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C03
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   1.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -3

Query: 325 HRHQRQDAHPHRGEPLRDRPRGHQAG 248
           H+H     HPHRG     +   H  G
Sbjct: 319 HQHHPSQYHPHRGSSPHHQHGNHTMG 344


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 742 PYHIRILRTTVRQEPGIGLKRRHVGTLQEIVRVVVHGQ 629
           PY   +L++T  + P I L+      L  +V  + HG+
Sbjct: 55  PYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGE 92


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 176 VLLTLVS*EHNNKTTNVSSNCLFNV 102
           +L+T V+  +NN      + CL N+
Sbjct: 467 ILMTTVNEGNNNMAATYMNECLLNI 491


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 4   YNVDCKQYYSTNKY 45
           Y  DC Q YST  +
Sbjct: 218 YTADCTQVYSTGNF 231


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 576 LQHRL*LSLHRCPGFHRDWPCTTTRTIS*SVPTCRLLSPIPGSCRTVVRKMR 731
           LQ +  + L   P   +   C+TT ++S        L P+  S  +  RK+R
Sbjct: 406 LQEKTKIDLLEIPPIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWRKLR 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,255
Number of Sequences: 438
Number of extensions: 4708
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)