Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C02
         (742 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BCT2 Cluster: Chromosome undetermined scaffold_10, wh...    37   0.45 
UniRef50_Q6L470 Cluster: Mutator transposable element, putative;...    36   1.4  
UniRef50_Q172Y6 Cluster: Wd40 protein; n=2; Culicidae|Rep: Wd40 ...    34   4.2  

>UniRef50_A0BCT2 Cluster: Chromosome undetermined scaffold_10, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_10,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 268

 Score = 37.1 bits (82), Expect = 0.45
 Identities = 24/82 (29%), Positives = 40/82 (48%)
 Frame = +3

Query: 132 LLHIYIYVYQSDKQLNNKLKTKIAPEMDGLI*TLLNMASTMKSYVNCLVSVIRIT*KDKL 311
           L++ YI V+  ++ + NK+K       +       +M +TM    NCLV  +     DK+
Sbjct: 108 LINHYIIVFFGNRTIQNKIKKMPIFYYNN------SMETTMPECNNCLVEQVE---NDKI 158

Query: 312 LQYEVYNLWINCMNENIFPPPL 377
            Q    N+ I C+ +  FPPP+
Sbjct: 159 TQLHCSNMQIYCLIQASFPPPM 180


>UniRef50_Q6L470 Cluster: Mutator transposable element, putative;
           n=1; Solanum demissum|Rep: Mutator transposable element,
           putative - Solanum demissum (Wild potato)
          Length = 626

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 421 LLSSRLEAKGIIHCNPY--VFKIYFEHITEVHYNNHCG 528
           L+ S +EA  ++ C P   V +IYFEH+   H +N CG
Sbjct: 27  LVGSNMEAAKVVTCIPKDRVVEIYFEHLNFYHDDNQCG 64


>UniRef50_Q172Y6 Cluster: Wd40 protein; n=2; Culicidae|Rep: Wd40
           protein - Aedes aegypti (Yellowfever mosquito)
          Length = 1477

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 456 YNALSLEPRGQ*LKMRNE-DFFSCNTVSMVAGKCFRSCSLSIDYTL 322
           Y  L   PRG     RN+ DFF+ +  S   GK  RSC  S+D  L
Sbjct: 8   YTMLECAPRGTAALQRNQSDFFTASKCSRSEGKTPRSCQRSLDIKL 53


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,327,674
Number of Sequences: 1657284
Number of extensions: 11023750
Number of successful extensions: 20084
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19994
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)