Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B24
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 1.9
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 1.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 2.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.3
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 27 3.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.3
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 3.3
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 4.4
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 26 4.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 26 4.4
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 5.8
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.6
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.6
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 7.6
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 660 GKDFENITKEXESHQMQLMKDMNNHEMLIYELQTMRSQSDVPQSFETKDIERN 502
G +F + E H++ ++ +N ML +T + +DV TKD E N
Sbjct: 63 GYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEEN 115
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 31 LVSSVAGLCPEVVYGWGRWWCWS 99
L S +A P ++Y WGR + WS
Sbjct: 217 LYSMMATSLPAIIYSWGRNFMWS 239
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 471 NYAMSSVNSENVDDDYEHAYAYIVDDDLKXRLRKQF 364
++ M ++NV++ YE +Y + D+ L KQ+
Sbjct: 870 SFVMKQSENDNVEESYEESYKFFCIDERYHFLEKQW 905
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 393 HHQQYKRKRVHNHHPHFH 446
HH + R H HPHFH
Sbjct: 168 HHHPHTRPPHHPPHPHFH 185
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = -3
Query: 666 DKGKDFENITKEXESHQMQLMKDMNNHEMLIYELQTMRSQ-----SDVPQSFETKDIERN 502
+KGK+FE+I + + + + N+ + + E +RS D P+ E K +
Sbjct: 146 EKGKNFESILQPQKRKETRGFHSKNDDDGRLEERDDLRSSVDDDYYDYPRYSERKSLNSK 205
Query: 501 GHCDSEDXEQNYAMSSVNS 445
H D+ + + S +S
Sbjct: 206 RHVDNYNENRRRHYDSYSS 224
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 357 SPGTVYVAXILNHHQQ---YKRKRVHNHHPHFHCSQRTSRS 470
SPG + +LN + + + HNHHP + TS S
Sbjct: 520 SPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNS 560
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 323 YRRVSVASRKTIRILRTLQTHPTKNHPPILIHSSFISRKKW 201
YR+ V +R ++LR + P P + HSSF R++W
Sbjct: 306 YRQDRVENRIQTQVLRHVDVDP----PIVEEHSSFFRRRRW 342
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 216 DKRAVNQDRW-VVFRWMCLEGPEYP 287
D +++D W ++ RW L+GPE+P
Sbjct: 124 DFTIISRDVWDLLVRWYGLKGPEFP 148
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 501 GHCDSEDXEQNYAMSSVNSENVDDDYEHAYA 409
G D + SVN ENV D +++A+A
Sbjct: 49 GFVGGSDLSKQQEQLSVNGENVIDSFDYAFA 79
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 498 HCDSEDXEQNYAMSSVNSENVDDDYEHAYAYIVDDDLKXRLRKQFRAI 355
H S D E+ Y M ++V Y+H + + DD+ + L++ F A+
Sbjct: 334 HKPSLDLEEGYIMDENYGKDV---YKHGISNVPDDENEDDLQRYFTAL 378
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 100 ESRRPFQLSPPRRHGLAQTP 159
ES PF + P+R G QTP
Sbjct: 481 ESNNPFPVMQPQRTGFGQTP 500
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 570 ELQTMRSQSDVPQSFETKDIERNGHCDSEDXEQNYAMSSVNSENVDDD 427
E Q+ S+SD + + G D ED E + S +S + D+D
Sbjct: 216 EKQSCSSESDRVSQISDDEEDEEGSADEEDEEDSDVELSESSLSDDED 263
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -3
Query: 657 KDFENITKEXESHQMQLMKDMNNHEMLIYELQTMRSQSDVP 535
+DF NI+ + H+++L+K+++ E+ + D+P
Sbjct: 828 EDFANISLKVSDHKVELVKNLSLLELALLICAVRFEARDIP 868
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.4 bits (53), Expect = 7.6
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Frame = +3
Query: 420 VHNHHPHFHCSQRTSRSFVXNLQNRNVHF---FLCPSFQNFAVRQT-----------VTA 557
+HN+ H + R F+ + + +H F FQN+ RQ +
Sbjct: 11 LHNNSAE-HLRFLSHRIFIGPIPSNFIHSTSGFFNKRFQNYTKRQICYNVASPNEPPIDF 69
Query: 558 SFVVHKSTSRDCSCPSSIASDVTR 629
SF++HKST + PS++ S T+
Sbjct: 70 SFLMHKSTDENPDTPSNLDSPSTQ 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,980
Number of Sequences: 5004
Number of extensions: 43890
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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