Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B22
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 64 1e-10
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 42 5e-04
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 41 0.001
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 41 0.001
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 34 0.17
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 33 0.22
01_07_0386 + 43218686-43218745,43218972-43219190,43219307-432193... 33 0.22
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 31 1.2
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 31 1.2
03_05_1041 - 29884975-29885107,29885485-29885552,29885652-298858... 29 3.6
11_04_0086 + 13362788-13362937,13363887-13363970,13364233-133642... 28 8.3
09_04_0437 - 17587944-17588909 28 8.3
08_02_1016 - 23606089-23607072 28 8.3
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -3
Query: 826 LYQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 680
+Y +T+ CW I K EG +F++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 288 MYSSTLDCWRKIYKVEGIKSFYRGALSNMFRSTGAAAILVLYDEVKKFM 336
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = -3
Query: 829 ILYQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIK 689
+ Y++++ ++ I K EG + FKGA +N+LR GA VL YD+++
Sbjct: 323 VKYKSSMDAFSQILKNEGAKSLFKGAGANILRAIAGAGVLSGYDQLQ 369
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -3
Query: 829 ILYQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 680
+ Y +++ + I EG + FKGA +N+LR GA VL YD+++ V+
Sbjct: 321 VKYNSSLDAFKQIVAKEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVVV 370
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -3
Query: 823 YQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKK 686
Y+N H I TEG F+G +N+L G GA VL YD++ +
Sbjct: 266 YKNAFHAAKQIVSTEGFFTLFRGVGANILSGMAGAGVLAGYDQLHR 311
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 826 LYQNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 683
+Y+N HC + TEG ++ +KG F+ R G A V+ ++++++
Sbjct: 811 VYRNGFHCGYQVVVTEGVTSLYKGGFATFARLGPQTAITFVVCEKLREL 859
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 832 DILYQNTIHCWATIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKV 683
D Y +TI C+ K +G AF+KG N R G+ + + ++++K+
Sbjct: 247 DSAYTSTIDCFVKTLKNDGPLAFYKGFLPNFARLGSWNVIMFLTLEQVQKL 297
>01_07_0386 +
43218686-43218745,43218972-43219190,43219307-43219391,
43219583-43219713,43219802-43219900,43219984-43220088,
43220190-43220264,43222006-43222092,43222129-43222173
Length = 301
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 832 DILYQNTIHCWATIAKTEGTSAFFKGAFSNVLR 734
D Y++T+ C+A K +G AF+KG +N R
Sbjct: 241 DATYKSTLDCFAKTLKNDGLPAFYKGFIANFCR 273
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 796 TIAKTEGTSAFFKGAFSNVLR-GTGGAFVLVLYDEIKKVL 680
+I KTEG + F+G F NV+R A L +D KK L
Sbjct: 179 SIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFL 218
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 SKSHDFTFNSIMCTEVKNTLHNYVNSL-PLCKKKWKFSIPTKLKFKID 258
S DFT NS+ +++YVN + + K K IP ++ FK D
Sbjct: 194 SMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKED 241
>03_05_1041 -
29884975-29885107,29885485-29885552,29885652-29885816,
29886262-29886372,29886999-29887072,29887387-29887480,
29887750-29887849,29888075-29888151,29888856-29888935,
29889025-29889157
Length = 344
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 823 YQNTIHCWATIAKTEGTSAFFKGAFSNVLRGT 728
Y+NT H TIA++EG + G + VL T
Sbjct: 57 YRNTAHAVYTIARSEGLRGLYAGFYPAVLGST 88
>11_04_0086 +
13362788-13362937,13363887-13363970,13364233-13364294,
13365146-13365507,13365928-13366142,13366236-13366292
Length = 309
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 823 YQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTG-GAFVLVLYDE 695
Y+N H IA EG A +KGA V+R +L YD+
Sbjct: 158 YKNAFHALYRIAADEGVLALWKGAGPTVVRAMSLNMGMLASYDQ 201
>09_04_0437 - 17587944-17588909
Length = 321
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 823 YQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 683
Y + C ++EG A +KG V R G F +VL+ +++V
Sbjct: 268 YSGALDCLIKTVRSEGAMALYKGFVPTVTR--QGPFTIVLFVTLEQV 312
>08_02_1016 - 23606089-23607072
Length = 327
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 823 YQNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKV 683
Y I C ++EG A +KG V R G F +VL+ +++V
Sbjct: 274 YSGAIDCALKTVRSEGVMALYKGFIPTVSR--QGPFTVVLFVTLEQV 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,231,871
Number of Sequences: 37544
Number of extensions: 339719
Number of successful extensions: 548
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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