Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    69   9e-13
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    58   1e-09
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    56   5e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   3.6  

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 76/281 (27%), Positives = 117/281 (41%), Gaps = 8/281 (2%)
 Frame = -3

Query: 868 AVDLLHKAAYRRGXGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAAL 689
           A+  LH+ A+ RG GN +++       IS   ++ FAS+    S  +V   G   ++A+ 
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSISE--IKDFASKAYVKSNFSVISSGPDVQKASD 213

Query: 688 IVQNLKLTSSDASQAEAST--YYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXX 515
           +         D S  +++      GE R    G   +  L    APA SP+         
Sbjct: 214 LCAKYFAVIPDGSPLKSAPTKISSGESRVYSKGT-NYFCLGFP-APAASPELFVLSSIL- 270

Query: 514 XLGNGPVTKWGADNSPLAKAIGNIGPFAAAGFN--VSYSDNGLFGVVLSVPKDEXXXXXX 341
             G     KW   N+ LAKA G    + A        YSD  L  VV+S    +      
Sbjct: 271 --GGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLLSVVISGSCPKAIKATA 328

Query: 340 XXXXXXKTSLSA----DAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDI 173
                   SLS+    D +K+G    KT+ L+  +  +    +++A  L + S  S   I
Sbjct: 329 SESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAISASSLVSASKGSDAFI 386

Query: 172 AKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 50
           +   D+++   IS+ VS+      S  AVGNL  +PY DEL
Sbjct: 387 S-GFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
            complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 494

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 23/278 (8%)
 Frame = -3

Query: 862  DLLHKAAYRRGX-GNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALI 686
            +  H  A++    GN L  +P ++N I++ S++ +      P    +   G  QE A  I
Sbjct: 183  EFAHVTAFQNNTLGNCLLCTPDKVNGITATSIREYLKYFYRPEHLTLAYAGIPQEIAKEI 242

Query: 685  VQNL--KLTSSDASQAEA--STYYGG--ELRKEIGG------DLAHVALAVQGAPAGSPQ 542
             + L   L SS     EA  S Y GG   ++K          +  HV +A++G P   P 
Sbjct: 243  TKELYGHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHVVIAMEGLPVTDPD 302

Query: 541  XXXXXXXXXXLGNGPVTKWGADN----SPLAKAIGNIGPFAAA--GFNVSYSDNGLFGVV 380
                      LG G     G       S L   + N  P+      FN SY+D+GLFG+ 
Sbjct: 303  IYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVETCMAFNHSYTDSGLFGMF 362

Query: 379  LSVPKDEXXXXXXXXXXXXKT---SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQ- 212
            +++  D                  S++++  +  KNQLK+ +L   ++     E L  Q 
Sbjct: 363  VTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSLLMNLESRMISLEDLGRQI 422

Query: 211  GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKIS 98
                G   +  ++ + ID ++ +D+S+         +S
Sbjct: 423  QTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVS 460


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 18/280 (6%)
 Frame = -3

Query: 862 DLLHKAAYRRGXGNSLFISPKR-INDISSESLQLFASQNITPSRCAVTVIGD-SQERAAL 689
           D LH  AY+        + PK  I  ++ E L  +   N    R  ++  G  S E    
Sbjct: 160 DHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVK 219

Query: 688 IVQ--------NLKLTSSDASQAEASTYYGGELR-KEIGGDLAHVALAVQGAPAGSPQXX 536
           + +        + +  S  A +     + G E+R ++     A++A+AV+G     P   
Sbjct: 220 LAEKYFGHLEPSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMSWKHPDYF 279

Query: 535 XXXXXXXXLGNGPVTKWGADN-SPLAKAIGNIGPFAAA--GFNVSYSDNGLFGVVL---S 374
                   +GN       + + S     I      A +   F+ SYSD GL+G+ L   +
Sbjct: 280 TALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTEN 339

Query: 373 VPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGS 194
           + + +             T  +   ++  K QL+  +L   D+ +++AE +  Q L TG 
Sbjct: 340 LGRIDDLVHFTLQNWARLTVATRAEVERAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGR 399

Query: 193 VRSAVDIAKDIDQISNNDISQAVSNAAKNK-ISIGAVGNL 77
             S  ++   I QI+  D+++  S    +K I++ AVG++
Sbjct: 400 RMSPQEVDLRIGQITEKDVARVASEMIWDKDIAVSAVGSI 439


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 258 MKPIQDRRLPNH*QRKAYTPALFALLLTSPRIST-RYPI 145
           ++PIQ  R+ +    KA+   L++LLL  P  +T RYP+
Sbjct: 111 IQPIQRGRVVDWEALKAFWKHLYSLLLKDPNDTTFRYPV 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,072
Number of Sequences: 5004
Number of extensions: 54562
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)