Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B19
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 122 6e-29
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 44 2e-05
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 42 8e-05
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 37 0.004
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 33 0.064
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 32 0.11
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 4.2
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 25 9.7
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 122 bits (294), Expect = 6e-29
Identities = 67/165 (40%), Positives = 89/165 (53%)
Frame = -3
Query: 669 TTDAVRLKCRELLTQALKAAGETSNACGSPXXXXXXXXECIYAEFKNTDMRYKNRVRSRV 490
T D +R C L+ AL + S++ A K T Y+NR+RS
Sbjct: 129 TDDKIRNNCIGLMYNALVIDSDESSSLIIAKAKEIDAQVLARAAGK-TGSEYRNRMRSLY 187
Query: 489 ANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLREKFIKEAIDDAQLATVQG 310
NLKD NP LR + I+ RL+ MT E+AS++ +K K +E + AQ A Q
Sbjct: 188 MNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKPQK 247
Query: 309 TKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRWKF 175
T++ CGKCK+K +Y Q+QTRS+DEPMTTF C CGNRWKF
Sbjct: 248 AVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWKF 292
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = -3
Query: 366 REKFIKEAIDDA---QLATVQGTKTEML-KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN 199
R +F ++ +DD + A +TE+ + KC + QLQ RS+DEPM+TF C
Sbjct: 41 RHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT 100
Query: 198 ECGNRWK 178
+C +W+
Sbjct: 101 KCKFQWR 107
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 8e-05
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = -3
Query: 519 RYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLREKFIKEAI 340
+Y+ + R+ NL D KNP R IS + L ++ EEMA+ ++K L E+ +++
Sbjct: 277 KYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQST 336
Query: 339 DD 334
++
Sbjct: 337 EN 338
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 291 KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRW 181
KC KC + T++ LQ RS+DE T F C C ++
Sbjct: 79 KCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKF 115
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 32.7 bits (71), Expect = 0.064
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -3
Query: 399 EEMASDEMKKLREKFIKEAIDDAQLATVQGTKTEMLK 289
E+MA DE+ +LRE+ A+ DA+L + Q TE LK
Sbjct: 182 EQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLK 218
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 31.9 bits (69), Expect = 0.11
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = -3
Query: 504 VRSRVANLKDP--KNPTLRTNFFNGVISASRL-AKMTPEEMASDEMKKLREKFIKEAIDD 334
VRS + L +P +PT T F N V+++ +L + TPE + D K+ E + ++
Sbjct: 220 VRSFLDALGEPIYLSPTSSTYFLNSVLASLQLNSSNTPESLLIDYQSKIPED-LSSSLLP 278
Query: 333 AQLATVQGTKTEM 295
+L T+Q T T +
Sbjct: 279 LELNTLQSTPTSV 291
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 91 VIKHMILKMYHYSKYLNHLSRLFRAVLAKF 180
VI+ ++ K YS+Y+N L +LAKF
Sbjct: 829 VIQSIVRKNIAYSRYINELRESSATLLAKF 858
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 411 KMTPEEMASDEMKKLREKFIKEAIDDAQLATVQGT 307
K++ E A +EMK +R +++A + +QGT
Sbjct: 283 KLSIESYAHEEMKSIRYSAVEKARTAKKFGLIQGT 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,154
Number of Sequences: 5004
Number of extensions: 50247
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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