Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B19
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0873 - 7257016-7257957,7260083-7260262 111 6e-25
03_06_0445 - 33982018-33982965,33984308-33984463 105 3e-23
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 54 1e-07
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 49 4e-06
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 41 0.001
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446... 33 0.20
12_02_0765 + 22980542-22980570,22980673-22980748,22981113-229812... 32 0.47
03_01_0015 + 126611-126639,126718-127099 30 2.5
04_04_0244 - 23869222-23870322,23871456-23871521 29 4.4
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 29 4.4
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 29 5.8
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 28 7.7
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 111 bits (267), Expect = 6e-25
Identities = 56/145 (38%), Positives = 75/145 (51%)
Frame = -3
Query: 606 ETSNACGSPXXXXXXXXECIYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVIS 427
E AC P ++ + N + K R RS + NLKD N R G +
Sbjct: 230 EEVKAC-DPFRIAVMVECALFQKLGNFNGPNKQRYRSLMFNLKDDHNTDFRRRVLLGQVQ 288
Query: 426 ASRLAKMTPEEMASDEMKKLREKFIKEAIDDAQLATVQGTKTEMLKCGKCKKKNCTYNQL 247
R+A +TP EMASD K +K ++A+ + + T+ KCG+C ++ TY QL
Sbjct: 289 PERIADLTPTEMASDTRKLENKKIEEKALFECERGGAPKATTDQFKCGRCGQRKTTYYQL 348
Query: 246 QTRSSDEPMTTFVLCNECGNRWKFC 172
QTRS+DEPMTTFV C C N WKFC
Sbjct: 349 QTRSADEPMTTFVTCVNCNNHWKFC 373
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 105 bits (253), Expect = 3e-23
Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = -3
Query: 516 YKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLREKFIKE-AI 340
+K + RS + NL+ N R G + RL ++PEEMASD +KL K IKE A+
Sbjct: 253 HKAKYRSIMFNLRADNNTDFRRRVLLGQVRPERLVDISPEEMASDA-RKLENKQIKEKAL 311
Query: 339 DDAQLATVQGTKTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNECGNRWKFC 172
D + T+ KCG+C ++ TY QLQTRS+DEPMTTFV C C N WKFC
Sbjct: 312 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 367
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 54.4 bits (125), Expect = 1e-07
Identities = 29/85 (34%), Positives = 48/85 (56%)
Frame = -3
Query: 549 IYAEFKNTDMRYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKK 370
++ F + +YK + RS + NLKD NP LR +G I+ RL MT EE+AS E+ +
Sbjct: 355 LFKLFGGVNKKYKEKGRSLLFNLKDKSNPELRERVLSGDITPDRLCSMTAEELASKELSE 414
Query: 369 LREKFIKEAIDDAQLATVQGTKTEM 295
R + +A + AQ+ + T+ ++
Sbjct: 415 WR---LAKAEELAQMVVLPSTEVDV 436
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = -3
Query: 519 RYKNRVRSRVANLKDPKNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLR 364
+YK + RS + NLKD NP LR +G I+ RL MT EE+AS E+ R
Sbjct: 341 KYKEKGRSLLFNLKDKSNPVLRGRVLSGDITPKRLCSMTTEELASKELSDWR 392
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 288 CGKCKKKNCTYNQLQTRSSDEPMTTFVLC--NECGNRWK 178
C +C+ Y Q+Q RS+DEPM+TF C EC W+
Sbjct: 796 CPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWR 834
>03_05_0889 +
28543106-28543354,28544379-28544465,28544548-28544604,
28544704-28544781
Length = 156
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 291 KCGKCKKKNCTYNQLQTRSSDEPMTTFVLCNEC 193
+C KCK Y Q RS+DE T F C C
Sbjct: 116 ECEKCKNPELQYYTKQLRSADEGQTVFYKCANC 148
>12_02_0765 +
22980542-22980570,22980673-22980748,22981113-22981271,
22981370-22981450
Length = 114
Score = 32.3 bits (70), Expect = 0.47
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 306 KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN-ECGNRWK 178
+T+ ++C C + Q R + FV CN CG+RW+
Sbjct: 70 RTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWR 113
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 306 KTEMLKCGKCKKKNCTYNQLQTRSSDEPMTTFVLCN-ECGNRWK 178
+T+ ++C C + Q R + FV CN C +RW+
Sbjct: 92 RTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWR 135
>04_04_0244 - 23869222-23870322,23871456-23871521
Length = 388
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 12 SPYLHTIVVNDSNNAFIFCKKPNHSKCNK 98
SPY+ V+ +SN+ F KKP H K N+
Sbjct: 134 SPYVSEFVLLESNSTFTGLKKPLHFKENR 162
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 29.1 bits (62), Expect = 4.4
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = -3
Query: 471 KNPTLRTNFFNGVISASRLAKMTPEEMASDEMKKLREKFIKEAIDDAQLATVQGTKTEML 292
K T + NG + K T E SDE ++L E+ I +D Q +QG KT +
Sbjct: 215 KEQTTMESLNNG--PEQNIEKGTNEIAESDENEELTEEDINNFLDQEQHEALQG-KTLEI 271
Query: 291 KCGKCKKKNCTY---NQLQTRSSDEPMTTFVLCNECG 190
K K C+ + QT + + TF CN G
Sbjct: 272 KASIYLKLECSSKLPHHKQTINGEVTRVTF-KCNRFG 307
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 55 HLYFARNQIIVNVIKHMILKMYHYSKYLNHL 147
HL ARN++I N H+IL YH + NHL
Sbjct: 113 HLIRARNRLIPNRF-HLILCKYHMIRGRNHL 142
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 390 ASDEMKKLREKFIKEAIDDAQLATVQGTKTEMLKCGKCKKK 268
A +K +R + + ID A +T + +K EML KC KK
Sbjct: 221 AFGSVKSIRTCYPQGGIDGAGTSTGKASKIEMLFANKCFKK 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,102,068
Number of Sequences: 37544
Number of extensions: 288241
Number of successful extensions: 822
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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