Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B18
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145...    28   8.0  

>02_01_0223 +
           1453478-1453750,1455788-1456018,1456066-1456200,
           1457918-1457971,1458417-1458482,1458593-1458679,
           1459338-1459394,1459470-1459500,1459577-1459634,
           1459710-1459761,1459881-1459917,1460008-1460210,
           1460556-1460633,1460683-1460853,1461126-1461239
          Length = 548

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 7   KNIINNLIEIGKYLFQAKYINLS*R 81
           +NI+++LIE  KYLFQA+   LS R
Sbjct: 454 QNIMDSLIEAPKYLFQAECEELSVR 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,321,910
Number of Sequences: 37544
Number of extensions: 122766
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)