Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B16
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 145 2e-35
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 144 4e-35
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 123 1e-28
03_04_0234 + 19121377-19121511,19121680-19122069 29 2.9
01_06_0048 + 25951544-25952074 28 3.9
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 28 5.1
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 28 5.1
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 5.1
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 6.8
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 27 8.9
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 27 8.9
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 145 bits (351), Expect = 2e-35
Identities = 64/149 (42%), Positives = 95/149 (63%)
Frame = -1
Query: 453 KLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXX 274
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
Query: 273 XXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 94
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQ
Sbjct: 65 EIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQ 124
Query: 93 IXKVEGXKAAAWRRPQGKQCHNSTSRXPI 7
I K +R KQ HNS + P+
Sbjct: 125 IIKTATVHFKLCKRDNTKQFHNSNIKFPL 153
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 144 bits (349), Expect = 4e-35
Identities = 65/152 (42%), Positives = 95/152 (62%)
Frame = -1
Query: 462 GVNKLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIV 283
G + +Y+V+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 2 GAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQIL 61
Query: 282 XXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAH 103
KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R
Sbjct: 62 AINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFP 121
Query: 102 SIQIXKVEGXKAAAWRRPQGKQCHNSTSRXPI 7
IQI K +R KQ H S + P+
Sbjct: 122 CIQIIKTATVHFKLCKRDNTKQFHKSDIKFPL 153
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 123 bits (296), Expect = 1e-28
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 17/166 (10%)
Frame = -1
Query: 453 KLREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFL 325
+ +Y+V+GR LP+ + P +Y+M++++ + + AKS+F W YFL
Sbjct: 5 RFHQYQVVGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFL 64
Query: 324 RQLKKFKKTTGEIVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQ 145
R+LKK KK+ G+++ KN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q
Sbjct: 65 RKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 124
Query: 144 CYRDMGARHRARAHSIQIXKVEGXKAAAWRRPQGKQCHNSTSRXPI 7
Y +M +RHR R IQI K +R KQ HN + + P+
Sbjct: 125 MYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPL 170
>03_04_0234 + 19121377-19121511,19121680-19122069
Length = 174
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 82 GRXQGCCVAPATGQTVPQQHQQXPNC 5
G +GC V PAT ++ Q QQ C
Sbjct: 57 GTVKGCIVPPATASSLQHQRQQGKQC 82
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 326 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 418
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 483 NTLSPGFGVNKLREYEVIGRKLPSENEPKPPLYKMRIFSP 364
N +S LR G+ ENE +PP YK R F P
Sbjct: 929 NHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPP 968
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 483 NTLSPGFGVNKLREYEVIGRKLPSENEPKPPLYKMRIFSP 364
N +S LR G+ ENE +PP YK R F P
Sbjct: 506 NHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPP 545
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 330 NTRNEIWRQLDPERKFSFYTREAWARSPTGA 422
N + WRQ+ F + E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 226 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 333
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 365 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLR 240
++ L PN V+ IS N R + R LVK + K +K SR R
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 365 RIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFQRKAPSRLR 240
++ L PN V+ IS N R + R LVK + K +K SR R
Sbjct: 21 KVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,702
Number of Sequences: 37544
Number of extensions: 300905
Number of successful extensions: 824
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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