Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B15
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 66 6e-12
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 65 1e-11
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 50 2e-07
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.46
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 26 5.6
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 65.7 bits (153), Expect = 6e-12
Identities = 42/134 (31%), Positives = 68/134 (50%)
Frame = -1
Query: 666 SXYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXEFLPIYSQAKK 487
S +D G G+I ++GDLLRA NPTLA I FL + ++
Sbjct: 13 SLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQ---FLQVLNRPNG 69
Query: 486 DKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDD 307
G E+F++ +++DK+ G++ EL + L +LGEKL + E+ E+ K D
Sbjct: 70 FDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGV---PVKD 126
Query: 306 GMIPYAAFLKKVMA 265
GM+ Y F++ ++A
Sbjct: 127 GMVNYHDFVQMILA 140
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 64.9 bits (151), Expect = 1e-11
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = -1
Query: 666 SXYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXE-FLPIYSQAK 490
S +D + G I + LG ++R+L +PT A + FL + ++
Sbjct: 19 SLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKM 78
Query: 489 KDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDD 310
KD D E+ E K++DK+ NG + ELTH L +LGE+L EVA++ ++ D
Sbjct: 79 KDTDNE--EEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA--DTDG 134
Query: 309 DGMIPYAAFLKKV 271
DG+I Y F + +
Sbjct: 135 DGVINYEEFSRVI 147
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -1
Query: 462 DFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAF 283
+F E L+D++++G + EL + +LG+ +E+ ++ + D +G I + F
Sbjct: 13 EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEV--DADGNGTIDFTEF 70
Query: 282 L 280
L
Sbjct: 71 L 71
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/132 (25%), Positives = 65/132 (49%)
Frame = -1
Query: 660 YDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXEFLPIYSQAKKDK 481
YD + G I ++G +LR+L N T A + F+ + K +
Sbjct: 18 YDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFV-----SNKLR 72
Query: 480 DQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGM 301
+ + E++++ +++DK+ +G + A+ + LGEKL D+EV + ++ DP + G
Sbjct: 73 ETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEA-DP-TNSGS 130
Query: 300 IPYAAFLKKVMA 265
Y F++++MA
Sbjct: 131 FDYYDFVQRIMA 142
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -1
Query: 465 EDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAA 286
++ E LYD +++GL+ + + L +LG + D+E+A+++ + D D+ + + +
Sbjct: 9 DEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKFMSFVS 68
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -1
Query: 504 YSQAKKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKD 331
Y+ + + + +D E KL+D +++ + EL + ALG + SEV ++ +D
Sbjct: 24 YAPLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRD 81
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = -1
Query: 492 KKDKDQGAYEDFLECLKLYDKNENGLMLGAELTHTLLALGEKLDDSEVAEVTKDCMDPED 313
+K ++ E+ +L+D +E G + L L E +DD E+ + ++ D
Sbjct: 101 EKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEF--DLD 158
Query: 312 DDGMIPYAAFLKKVM 268
DG I F+ +M
Sbjct: 159 QDGEINEQEFIAIMM 173
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 112 APPEELSPPRALPAPVPQSRASVF*GPSHRT 204
APP PP A P P+P S A P R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 378 LGEKLDDSEVAEVTKDCMDPED 313
L EK+ D + + DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,881
Number of Sequences: 5004
Number of extensions: 41095
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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