Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B15
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.6  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   8.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 87  HVDIPYNXLDTDKPLFYTNNII 22
           ++DI +N     K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 87  HVDIPYNXLDTDKPLFYTNNII 22
           ++DI +N     K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 93  PSHVDIPYNXLDTDKPLFYT-NNIIXTVL 10
           P+  DI +  +   K LFYT N I+ TVL
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLILPTVL 246


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 87  HVDIPYNXLDTDKPLFYTNNII 22
           ++DI +N     K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 105 PARAPSHVDIPYNXLDTDKPLFYTNNII 22
           P     + DI +N     K LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 283 PEEGHGVEDITTRHIFSYKIVT 218
           P EG  + D   RHI    I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 429 SCHTASDIPGNLHTLPGLCLSLLG 500
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 81  DIPYNXLDTDKPLFYTNNII 22
           DI +N     K LFYT N+I
Sbjct: 225 DIVFNITLRRKTLFYTVNLI 244


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 3   SCTKQLXLCCSYKKGVCPY 59
           +C  +   C +   G+CPY
Sbjct: 439 TCNSKTKCCFAQDDGLCPY 457


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 554 QRRRARSCSHSKSSFPSTAKQRKTKTRER 468
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,774
Number of Sequences: 438
Number of extensions: 3017
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)