Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B13
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   2.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    27   2.7  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   3.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   6.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   8.2  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 161 SIFVYKLFSISCKLTPSIIDV 99
           SIFVY +F+ISC L  +I+ +
Sbjct: 153 SIFVYTVFNISCALPRNIVQM 173


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 144 TIFHQLQAYTIHYRCASMFCN 82
           TI H L  YT+H++C+    N
Sbjct: 18  TIIHALPTYTVHWKCSIQQAN 38


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 330 GNVPSPLYVLKHLR 371
           G +P PLYV+ HLR
Sbjct: 790 GTIPRPLYVISHLR 803


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 160  LIFNRRKYVASRHHVF 207
            L+FN R Y++ R HVF
Sbjct: 1151 LLFNHRSYMSGRFHVF 1166


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 598 SLRSFNVQNAKPYFCFVSRDPWNRSRSGTILRAAFLLH-DRL 476
           +LR +   +  PY CF+ +D +  + +  I R +  +H DR+
Sbjct: 242 NLRKYYKSDQPPYCCFIDKDDFTIALAHAISRHSGQVHKDRI 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,470
Number of Sequences: 5004
Number of extensions: 59342
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)