Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B13
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich ...    29   4.4  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical
           protein C44B9.2 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 526 SGSKDRG*QNKSKASHFGR*NSAKTRQELIGRPNSFKFPIVSRIKY 663
           SGS + G +N+ K++   + NS+ +RQ  I  PN   F +VS + +
Sbjct: 75  SGSNNSGKKNQRKSTPRKQENSSASRQGTIPNPNLKFFQLVSPLPF 120


>Z73971-1|CAA98249.2|  929|Caenorhabditis elegans Hypothetical
           protein C50H2.1 protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 468 HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGAL 358
           HE  P P R+LR SLN    +  +  EGSAD   G++
Sbjct: 833 HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSI 868


>AF224743-1|AAF82248.1|  929|Caenorhabditis elegans leucine-rich
           repeat-containingG protein-coupled receptor protein.
          Length = 929

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 468 HESQPVPLRRLRRSLNPYPYSYNQGAEGSADVSGGAL 358
           HE  P P R+LR SLN    +  +  EGSAD   G++
Sbjct: 833 HEHVPHPRRKLRSSLNRI-LALGRRQEGSADSGRGSI 868


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 361 FNTYKGEGTFPYYNK 317
           +NTY G G +PYYN+
Sbjct: 285 YNTYAGYGGYPYYNQ 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,498
Number of Sequences: 27780
Number of extensions: 349085
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)