Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B10
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    31   0.17 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    30   0.39 
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    30   0.52 
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    28   1.6  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    27   2.7  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   4.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
 Frame = +3

Query: 399 NSLKHSHSYQ*ILTSHIRSV*SLSHTYITQYENSHKISFYTDGFRLQVTSSTIQHRFSSV 578
           + L+H    +  LTS      SL   +I  + N  + SF+T  F L+  +S     +   
Sbjct: 227 SDLEHGKQSRVSLTSKSTPDNSLPPNFINNHSNVFRRSFHTCNFSLKSAASL----YCDT 282

Query: 579 KSSFLS-EKNTLRSLVRTTSKAHIQSVSHTSAQFVFKQFKRDDRQRSI 719
           +   L+     L S +    K H+Q+ ++ S  F    F+R  +  S+
Sbjct: 283 QDILLNVNSQNLTSTLEKYKKMHLQNPNNFSLDFTLSIFERLRKDSSL 330


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 543 TSSTIQHRFSSVKSSFLSEKNT--LRSLVRTTSKAHIQSVSHTS 668
           T + ++   S  K+SFLS KN+  ++S     S AH Q V+HT+
Sbjct: 32  TPAPVRKGLSKFKNSFLSRKNSSQIKSPSDYKSSAHEQRVNHTT 75


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 533 ITSHVLYNTAPVQFREIIFPIRKKYIALSRTYYKQGTHSISLAH 664
           I +H+  NT+ ++  + +FP RK Y A    YYK  T    LAH
Sbjct: 236 IQTHISENTSEIELVKELFPERKSY-ADVYDYYKLLTPQTILAH 278


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 143 ICLYKNNTNRKRRCNSEQIQRRTSSCTINYNN 238
           + +  NNT +K   N+E+++    S ++NY N
Sbjct: 85  VVIIDNNTPKKEESNAEKLKLDKDSSSVNYEN 116


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +3

Query: 501 HKISFYTDGFRLQVTSSTIQHRFSSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTSAQFV 680
           H I    D ++L +++  I+    S  +    EK  LR LV+      IQS+ +T    V
Sbjct: 365 HLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTHLCQV 424

Query: 681 FKQFKRDDRQRSI-SRQCLRYCTTAAV 758
           +K+      +R + S Q  ++ T   V
Sbjct: 425 YKEVGLQTHERGLTSDQFAKFLTDIGV 451


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 540 VTSSTIQHRFSSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTS 668
           V++ST + R +SV  SF++        V  + +AH++S S  S
Sbjct: 276 VSASTSRERSTSVAPSFITSDQAATPDVLKSEEAHVESFSKES 318


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 543 TSSTIQHRFSSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTSAQF 677
           +SS+     SS KSS  S K++ RS  RTTS    ++ SH S+ +
Sbjct: 148 SSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSH---RTTSHKSSSY 189


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 540 VTSSTIQHRFSSVKSSFLSEKN---TLRSLVRTTSKAHIQSVSHT 665
           VTSST   +FSS+ SS LS +N      SL  T +K+ + + S T
Sbjct: 499 VTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTT 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,843
Number of Sequences: 5004
Number of extensions: 71895
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)