Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B10
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gate...    29   3.4  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    23   8.6  

>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +3

Query: 378 SRLLLHPNSLKHSHSYQ*ILTSHIRSV*SLSHTYITQYENSHKISFYTDGFRLQV 542
           +R+L + NS +  H Y    T ++RS+ SLS TY  Q+E+   I+   +  +L +
Sbjct: 736 NRVLKNYNSSQVQHDY----TLYLRSLLSLSWTYPVQHEDMEYITHVAESPKLNI 786


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = +3

Query: 378 SRLLLHPNSLKHSHSYQ*ILTSHIRSV*SLSHTYITQYENSHKISFYTDGFRLQV 542
           +R+L + NS +  H Y    T ++RS+ SLS TY  Q+E+   I+   +  +L +
Sbjct: 736 NRVLKNYNSSQVQHDY----TLYLRSLLSLSWTYPVQHEDMEYITHVAESPKLNI 786


>U14635-11|AAK84494.2|  500|Caenorhabditis elegans Glutamate-gated
           chloride channelprotein 4 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
 Frame = +3

Query: 528 FRLQVT-SSTIQHRFSSVKSSFLSEKNTLRSLVRTTSKAHIQSVSHTS-------AQFVF 683
           +R Q+T    +Q   ++V+ S  +  N  R  V  T+  +I+S+S  S       AQF F
Sbjct: 42  WREQMTVCDLLQDYDAAVRPSGRTPYNDTRGAVMVTTSLNIRSISAVSEKNMEFVAQFRF 101

Query: 684 KQFKRDDRQRSISRQCL 734
           +Q   DDR R I  Q L
Sbjct: 102 RQEWYDDRLRFIEHQGL 118


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 23.4 bits (48), Expect(2) = 8.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 845 PPVPPSRNG 819
           PPVPPSR+G
Sbjct: 103 PPVPPSRSG 111



 Score = 23.0 bits (47), Expect(2) = 8.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 842 PVPPSRNGG 816
           PVPPSR+GG
Sbjct: 114 PVPPSRSGG 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,465
Number of Sequences: 27780
Number of extensions: 419348
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)