Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B06
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   2.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.8  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   6.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   6.4  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = +1

Query: 247 ENNN*Y*NSLFKAVSC*VERISSIDFKIIGSRFSGFRNIFMRLKVIPTAIPRLLAHLI-- 420
           E+ N   +  F  VS  V  +SSIDF+I G  F    +I   L + P+ IP L++ +   
Sbjct: 227 EDPNVLLDRFFLRVSYAVSYVSSIDFQIAG--FMLLSSIAASLPLSPSIIPPLVSAITDR 284

Query: 421 IKNNRIANSILALNH 465
           +  + I  +++ + H
Sbjct: 285 LSFDNIKPALICVGH 299


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 114 SIMARLWNSYYKLLTIKIL 58
           SI A++W  +Y+LL +K+L
Sbjct: 844 SISAKIWCDHYRLLAVKVL 862


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 337 SRFSGFRNIFMRLKVIPTAIPRLLAHLIIKNN 432
           SRF+G RN        P   PR  AH ++ +N
Sbjct: 6   SRFTGLRNTSFLGHARPFMFPRRYAHSLVAHN 37


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 220 IISVNQL-F*TPYGIIDPDL*FHASPLRS 137
           +I +N + F  PYG ++PD    A PL++
Sbjct: 237 LIGINYMAFYNPYGFMEPDCALPADPLKT 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,329
Number of Sequences: 5004
Number of extensions: 49288
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)