Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B06
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699...    28   8.8  
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747...    28   8.8  

>12_02_0937 -
           24568475-24569145,24569215-24569319,24569419-24569991,
           24570480-24570780,24570867-24572039,24572260-24572328
          Length = 963

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 150 RP*EVQRSVKELSIMARLWNSYYKLLTIKILQLTHSLRCQR 28
           RP +    +KE+SI   LW++++     +I++L   LR Q+
Sbjct: 765 RPIQKDIVLKEISINLDLWSNFFSKPPPEIIRLMEGLRVQK 805


>03_06_0775 -
           36174098-36174204,36174540-36174594,36174690-36174741,
           36174947-36175028,36175110-36175204,36175339-36175727
          Length = 259

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 93  NSYYKLLTIKILQLTHS 43
           N+YYKLL IK+L + HS
Sbjct: 108 NAYYKLLDIKVLLVLHS 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,643
Number of Sequences: 37544
Number of extensions: 259789
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)