Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B05
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    31   0.25 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -1

Query: 336 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 157
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 156 PRTDSQGNMCSIRLK*AYQS*RQVNXR 76
            R ++     S+  K    + R  N R
Sbjct: 292 SRDNNLSRESSVSSKHLDYNSRNYNKR 318


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 299 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 183
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 582 VPLIHVFCQYEMQVRSNRRPASNLHQSPEILLVHRPALTHPNL-LRLTL 725
           +PL+ + C     +    R AS+LHQ    +L     LT P+L LRL L
Sbjct: 386 IPLVTITC-LTSALAEYARDASDLHQLQNSILRVNSTLTSPSLDLRLEL 433


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 288 LCHQFSTSSVHQVLILQYL 344
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,358
Number of Sequences: 5004
Number of extensions: 56718
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)