Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B05
(807 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC112935-1|AAI12936.1| 1699|Homo sapiens QSER1 protein protein. 33 1.2
AK126023-1|BAC86397.1| 1315|Homo sapiens protein ( Homo sapiens ... 33 1.2
AK025577-1|BAB15176.1| 724|Homo sapiens protein ( Homo sapiens ... 33 1.2
AY223817-1|AAP41105.1| 863|Homo sapiens Cohen syndrome 1 protei... 32 2.8
AY223816-1|AAP41104.1| 1427|Homo sapiens Cohen syndrome 1 protei... 32 2.8
AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protei... 32 2.8
AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protei... 32 2.8
AK091431-1|BAC03664.1| 992|Homo sapiens protein ( Homo sapiens ... 32 2.8
AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein. 32 2.8
AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein. 32 2.8
BC142619-1|AAI42620.1| 772|Homo sapiens LAMB4 protein protein. 31 3.7
AF172277-3|AAF22284.1| 761|Homo sapiens laminin beta 1 related ... 31 3.7
AF028816-1|AAC95123.1| 1761|Homo sapiens laminin beta-4 chain pr... 31 3.7
Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain prot... 30 8.6
S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain prot... 30 8.6
>BC112935-1|AAI12936.1| 1699|Homo sapiens QSER1 protein protein.
Length = 1699
Score = 33.1 bits (72), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -1
Query: 378 FVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDN 199
FV+ D++ + + + + +WK+ KALLQKF+P +G+ T Y G+ D
Sbjct: 1360 FVVKIEDIETFKEALKTGKEPPAIWKVQ-KALLQKFVPEIRDGQREFAATNSYLGYFGDA 1418
Query: 198 RDNYYPITEILDRNPRTDSQGNMCS 124
+ Y I N +CS
Sbjct: 1419 KSKYKRIYVKFIENANKKEYVRVCS 1443
>AK126023-1|BAC86397.1| 1315|Homo sapiens protein ( Homo sapiens cDNA
FLJ44035 fis, clone TESTI4028612. ).
Length = 1315
Score = 33.1 bits (72), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -1
Query: 378 FVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDN 199
FV+ D++ + + + + +WK+ KALLQKF+P +G+ T Y G+ D
Sbjct: 1121 FVVKIEDIETFKEALKTGKEPPAIWKVQ-KALLQKFVPEIRDGQREFAATNSYLGYFGDA 1179
Query: 198 RDNYYPITEILDRNPRTDSQGNMCS 124
+ Y I N +CS
Sbjct: 1180 KSKYKRIYVKFIENANKKEYVRVCS 1204
>AK025577-1|BAB15176.1| 724|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21924 fis, clone HEP04086. ).
Length = 724
Score = 33.1 bits (72), Expect = 1.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = -1
Query: 378 FVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDN 199
FV+ D++ + + + + +WK+ KALLQKF+P +G+ T Y G+ D
Sbjct: 325 FVVKIEDIETFKEALKTGKEPPAIWKVQ-KALLQKFVPEIRDGQREFAATNSYLGYFGDA 383
Query: 198 RDNYYPITEILDRNPRTDSQGNMCS 124
+ Y I N +CS
Sbjct: 384 KSKYKRIYVKFIENANKKEYVRVCS 408
>AY223817-1|AAP41105.1| 863|Homo sapiens Cohen syndrome 1 protein
splice variant 3 protein.
Length = 863
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKNENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>AY223816-1|AAP41104.1| 1427|Homo sapiens Cohen syndrome 1 protein
splice variant 2 protein.
Length = 1427
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKNENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>AY223815-1|AAP41103.1| 3997|Homo sapiens Cohen syndrome 1 protein
splice variant 1 protein.
Length = 3997
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKNENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>AY223814-1|AAP41102.1| 4022|Homo sapiens Cohen syndrome 1 protein
protein.
Length = 4022
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKNENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>AK091431-1|BAC03664.1| 992|Homo sapiens protein ( Homo sapiens
cDNA FLJ34112 fis, clone FCBBF3008870. ).
Length = 992
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 83 LKSDIKNENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 133
Query: 189 YYPI 178
P+
Sbjct: 134 LLPV 137
>AJ608773-1|CAE75585.1| 3997|Homo sapiens VPS13B-2A protein protein.
Length = 3997
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKDENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>AJ608772-1|CAE75584.1| 4022|Homo sapiens VPS13B-1A protein protein.
Length = 4022
Score = 31.9 bits (69), Expect = 2.8
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 369 LKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDN 190
LKSD+K + +T+++ +E+ ALL+++IP L KCTC S + D+
Sbjct: 612 LKSDIKDENETILNP-EEV--------ALLEEYIPTRHTSVTLLKCTCTISMAEFNLLDH 662
Query: 189 YYPI 178
P+
Sbjct: 663 LLPV 666
>BC142619-1|AAI42620.1| 772|Homo sapiens LAMB4 protein protein.
Length = 772
Score = 31.5 bits (68), Expect = 3.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 177 LWGNNCHGCQHSTQNTHMYICVKLFHLIPLG*ISVIMLC 293
L G C CQH+T+ H C LF+ PL IS C
Sbjct: 354 LSGGVCEDCQHNTEGQHCDRCRPLFYRDPLKTISDPYAC 392
>AF172277-3|AAF22284.1| 761|Homo sapiens laminin beta 1 related
protein protein.
Length = 761
Score = 31.5 bits (68), Expect = 3.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 177 LWGNNCHGCQHSTQNTHMYICVKLFHLIPLG*ISVIMLC 293
L G C CQH+T+ H C LF+ PL IS C
Sbjct: 342 LSGGVCEDCQHNTEGQHCDRCRPLFYRDPLKTISDPYAC 380
>AF028816-1|AAC95123.1| 1761|Homo sapiens laminin beta-4 chain
precursor protein.
Length = 1761
Score = 31.5 bits (68), Expect = 3.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 177 LWGNNCHGCQHSTQNTHMYICVKLFHLIPLG*ISVIMLC 293
L G C CQH+T+ H C LF+ PL IS C
Sbjct: 354 LSGGVCEDCQHNTEGQHCDRCRPLFYRDPLKTISDPYAC 392
>Z68155-1|CAA92279.1| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 30.3 bits (65), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 183 GNNCHGCQHSTQNTHMYICVKLFHLIP 263
G C GCQH+T H +C F+ P
Sbjct: 371 GGVCDGCQHNTAGRHCELCRPFFYRDP 397
>S77512-1|AAB34682.2| 1798|Homo sapiens laminin beta 2 chain
protein.
Length = 1798
Score = 30.3 bits (65), Expect = 8.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 183 GNNCHGCQHSTQNTHMYICVKLFHLIP 263
G C GCQH+T H +C F+ P
Sbjct: 371 GGVCDGCQHNTAGRHCELCRPFFYRDP 397
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,060,773
Number of Sequences: 237096
Number of extensions: 1870425
Number of successful extensions: 4012
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -