Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B04
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0133 - 1057679-1057880,1058112-1058377                           30   2.2  
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338...    29   5.0  
03_06_0083 - 31532213-31532775,31534016-31534043                       29   5.0  
03_06_0040 + 31240164-31241102,31241280-31241897                       28   6.6  

>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 212 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 301
           CT+  RL WPCR  QP  +GL P  R    L+
Sbjct: 64  CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93


>03_06_0513 -
           34432798-34433043,34433272-34433436,34433557-34433842,
           34434972-34435054,34435388-34435495,34435687-34435944,
           34436388-34436555,34436865-34437090,34437923-34438035,
           34438180-34438548,34439475-34439516,34439576-34439686,
           34439883-34440086
          Length = 792

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 21  IHN-FFSTLQPSKCLLASAVSNLLPAVVFV 107
           +H+ F S ++PS C L S V  + P+V F+
Sbjct: 84  VHDAFLSQIEPSMCFLGSGVEQIGPSVCFL 113


>03_06_0083 - 31532213-31532775,31534016-31534043
          Length = 196

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 406 RALMSGVSSRNR--MAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPALA 564
           R  +  V +R R  ++G G+ GLS  LG  + P      +P L+SS+   DP LA
Sbjct: 94  RGRVGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLA 148


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -3

Query: 203 PDSLSEERQKAQ-LQRMLDLKVNPIDGLASKWDY 105
           PD+ ++   +AQ L+ +LD ++NP+ G A+ WDY
Sbjct: 202 PDADTDMSMEAQELRHVLD-ELNPLIGAANLWDY 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,826,159
Number of Sequences: 37544
Number of extensions: 511624
Number of successful extensions: 1387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)