Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    31   0.29 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   1.6  

>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -2

Query: 829 IVADSSKKYLRNLAVTSCHYNCQILLWLFSCL*FHYLREYNNYCDLEKVNYNHK 668
           +V DS K++L   +    +   ++++++ SC    Y+ E  NY DL  ++ + K
Sbjct: 316 VVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGK 369


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 456 IDISLEHNMLSSNESLFKNYIFDPVYLTHK 367
           ID+ L HN+L  +E   KN  +D   LT K
Sbjct: 893 IDVLLFHNVLKYSEPFLKNLAYDTFLLTLK 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,609
Number of Sequences: 5004
Number of extensions: 52261
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)