Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_B01
(429 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D50371-1|BAA23322.1| 69|Homo sapiens ATP synthase subunit e pr... 49 6e-06
BT006922-1|AAP35568.1| 69|Homo sapiens ATP synthase, H+ transp... 49 6e-06
BC105610-1|AAI05611.1| 69|Homo sapiens ATP synthase, H+ transp... 49 6e-06
BC003679-1|AAH03679.1| 69|Homo sapiens ATP synthase, H+ transp... 49 6e-06
M12529-1|AAB59518.1| 317|Homo sapiens apolipoprotein E protein. 31 1.7
M10065-1|AAB59397.1| 317|Homo sapiens apolipoprotein E protein. 31 1.7
K00396-1|AAB59546.1| 317|Homo sapiens preapolipoprotein E protein. 31 1.7
BC151242-1|AAI51243.1| 1983|Homo sapiens myosin, heavy chain 7B,... 31 1.7
BC007808-1|AAH07808.1| 1006|Homo sapiens MYH7B protein protein. 31 1.7
BC003557-1|AAH03557.1| 317|Homo sapiens apolipoprotein E protein. 31 1.7
AL133324-2|CAI19310.2| 1983|Homo sapiens myosin, heavy chain 7B,... 31 1.7
AL132825-6|CAI43047.2| 1983|Homo sapiens myosin, heavy chain 7B,... 31 1.7
AF261279-1|AAG27089.1| 317|Homo sapiens apolipoprotein-E protein. 31 1.7
AF050154-3|AAD02505.1| 317|Homo sapiens apolipoprotein E protein. 31 1.7
AB040945-1|BAA96036.2| 2010|Homo sapiens KIAA1512 protein protein. 31 1.7
D87440-1|BAA13382.2| 702|Homo sapiens KIAA0252 protein. 30 3.8
BC052279-1|AAH52279.1| 307|Homo sapiens leucine rich repeat con... 30 3.8
BC017168-1|AAH17168.1| 307|Homo sapiens leucine rich repeat con... 30 3.8
BC015052-1|AAH15052.1| 585|Homo sapiens Rtf1, Paf1/RNA polymera... 30 3.8
Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein. 29 5.1
BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein. 29 5.1
AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein. 29 5.1
AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein. 29 5.1
AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens ... 29 5.1
AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein. 29 5.1
X98260-1|CAA66913.1| 582|Homo sapiens M-phase phosphoprotein 11... 29 6.7
D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein. 29 6.7
BC139751-1|AAI39752.1| 620|Homo sapiens ZRF1 protein protein. 29 6.7
BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein. 29 6.7
AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium ch... 29 6.7
AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium ch... 29 6.7
AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium ch... 29 6.7
AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium ch... 29 6.7
AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant... 29 6.7
X14684-1|CAA32815.1| 296|Homo sapiens La 4.1 protein protein. 29 8.8
X13697-1|CAA31985.1| 408|Homo sapiens protein ( Human mRNA for ... 29 8.8
M20328-1|AAA36577.1| 355|Homo sapiens protein ( Human ribonucle... 29 8.8
J04205-1|AAA51885.1| 408|Homo sapiens La protein protein. 29 8.8
BT009862-1|AAP88864.1| 408|Homo sapiens Sjogren syndrome antige... 29 8.8
BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance ... 29 8.8
BC107891-1|AAI07892.1| 291|Homo sapiens SMC2 protein protein. 29 8.8
BC071750-1|AAH71750.1| 356|Homo sapiens SMC2 protein protein. 29 8.8
BC055081-1|AAH55081.1| 209|Homo sapiens SMC2 protein protein. 29 8.8
BC032705-1|AAH32705.1| 781|Homo sapiens SMC2 protein protein. 29 8.8
BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation ... 29 8.8
BC020818-1|AAH20818.1| 408|Homo sapiens Sjogren syndrome antige... 29 8.8
BC017845-1|AAH17845.1| 289|Homo sapiens Unknown (protein for IM... 29 8.8
BC003396-1|AAH03396.1| 289|Homo sapiens Unknown (protein for IM... 29 8.8
BC001289-1|AAH01289.1| 408|Homo sapiens Sjogren syndrome antige... 29 8.8
AY739716-1|AAW65985.1| 760|Homo sapiens chromosome-associated p... 29 8.8
AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance ... 29 8.8
AL161791-2|CAI16867.1| 145|Homo sapiens structural maintenance ... 29 8.8
AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance ... 29 8.8
AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein pr... 29 8.8
AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein. 29 8.8
AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated p... 29 8.8
AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation ... 29 8.8
AC079447-4|AAX93258.1| 492|Homo sapiens unknown protein. 29 8.8
AC009967-1|AAY14868.1| 408|Homo sapiens unknown protein. 29 8.8
AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein. 29 8.8
>D50371-1|BAA23322.1| 69|Homo sapiens ATP synthase subunit e
protein.
Length = 69
Score = 49.2 bits (112), Expect = 6e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = -2
Query: 326 PVRISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA 150
PV++SPLIK GR+S L +GV YGA N L + + R I A+EK +D + +E A
Sbjct: 4 PVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELA 62
>BT006922-1|AAP35568.1| 69|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit e
protein.
Length = 69
Score = 49.2 bits (112), Expect = 6e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = -2
Query: 326 PVRISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA 150
PV++SPLIK GR+S L +GV YGA N L + + R I A+EK +D + +E A
Sbjct: 4 PVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELA 62
>BC105610-1|AAI05611.1| 69|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit E
protein.
Length = 69
Score = 49.2 bits (112), Expect = 6e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = -2
Query: 326 PVRISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA 150
PV++SPLIK GR+S L +GV YGA N L + + R I A+EK +D + +E A
Sbjct: 4 PVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELA 62
>BC003679-1|AAH03679.1| 69|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit E
protein.
Length = 69
Score = 49.2 bits (112), Expect = 6e-06
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = -2
Query: 326 PVRISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA 150
PV++SPLIK GR+S L +GV YGA N L + + R I A+EK +D + +E A
Sbjct: 4 PVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELA 62
>M12529-1|AAB59518.1| 317|Homo sapiens apolipoprotein E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>M10065-1|AAB59397.1| 317|Homo sapiens apolipoprotein E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>K00396-1|AAB59546.1| 317|Homo sapiens preapolipoprotein E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>BC151242-1|AAI51243.1| 1983|Homo sapiens myosin, heavy chain 7B,
cardiac muscle, beta protein.
Length = 1983
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA-SALEIKALEE 120
L GA Q ++ + +A+ E+E + + R A+ + EK+RA +A E++ L E
Sbjct: 1148 LLGAQMQKKIKELQARAEELEEELEAERAARARVEKQRAEAARELEELSE 1197
>BC007808-1|AAH07808.1| 1006|Homo sapiens MYH7B protein protein.
Length = 1006
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA-SALEIKALEE 120
L GA Q ++ + +A+ E+E + + R A+ + EK+RA +A E++ L E
Sbjct: 171 LLGAQMQKKIKELQARAEELEEELEAERAARARVEKQRAEAARELEELSE 220
>BC003557-1|AAH03557.1| 317|Homo sapiens apolipoprotein E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>AL133324-2|CAI19310.2| 1983|Homo sapiens myosin, heavy chain 7B,
cardiac muscle, beta protein.
Length = 1983
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA-SALEIKALEE 120
L GA Q ++ + +A+ E+E + + R A+ + EK+RA +A E++ L E
Sbjct: 1148 LLGAQMQKKIKELQARAEELEEELEAERAARARVEKQRAEAARELEELSE 1197
>AL132825-6|CAI43047.2| 1983|Homo sapiens myosin, heavy chain 7B,
cardiac muscle, beta protein.
Length = 1983
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA-SALEIKALEE 120
L GA Q ++ + +A+ E+E + + R A+ + EK+RA +A E++ L E
Sbjct: 1148 LLGAQMQKKIKELQARAEELEEELEAERAARARVEKQRAEAARELEELSE 1197
>AF261279-1|AAG27089.1| 317|Homo sapiens apolipoprotein-E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>AF050154-3|AAD02505.1| 317|Homo sapiens apolipoprotein E protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.7
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -2
Query: 320 RISPLIKFGRWSFLTVGVLYGAFHQNRLSKKEAKLR-EIEAKEKVIRDAKLKEEKERASA 144
R+ PL++ GR TVG L G Q R +LR +E RD +L E KE+ +
Sbjct: 198 RLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRD-RLDEVKEQVAE 256
Query: 143 LEIKALEEMA 114
+ K LEE A
Sbjct: 257 VRAK-LEEQA 265
>AB040945-1|BAA96036.2| 2010|Homo sapiens KIAA1512 protein protein.
Length = 2010
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -2
Query: 266 LYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERA-SALEIKALEE 120
L GA Q ++ + +A+ E+E + + R A+ + EK+RA +A E++ L E
Sbjct: 1175 LLGAQMQKKIKELQARAEELEEELEAERAARARVEKQRAEAARELEELSE 1224
>D87440-1|BAA13382.2| 702|Homo sapiens KIAA0252 protein.
Length = 702
Score = 29.9 bits (64), Expect = 3.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 245 NRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
NR+ K+E R E K+K ++ AK KE+KE+ E
Sbjct: 202 NRIEKREVLKRRFEIKKK-LKTAKKKEKKEKKKKQE 236
>BC052279-1|AAH52279.1| 307|Homo sapiens leucine rich repeat
containing 59 protein.
Length = 307
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 233 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*K 90
K+EAK R EA+E+ +R + EEKER E AL+ KK K
Sbjct: 172 KREAKQRAKEAQERELRKREKAEEKERRRK-EYDALKAAKREQEKKPK 218
>BC017168-1|AAH17168.1| 307|Homo sapiens leucine rich repeat
containing 59 protein.
Length = 307
Score = 29.9 bits (64), Expect = 3.8
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = -2
Query: 233 KKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEEMASGTAKK*K 90
K+EAK R EA+E+ +R + EEKER E AL+ KK K
Sbjct: 172 KREAKQRAKEAQERELRKREKAEEKERRRK-EYDALKAAKREQEKKPK 218
>BC015052-1|AAH15052.1| 585|Homo sapiens Rtf1, Paf1/RNA polymerase
II complex component, homolog (S. cerevisiae) protein.
Length = 585
Score = 29.9 bits (64), Expect = 3.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -2
Query: 245 NRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
NR+ K+E R E K+K ++ AK KE+KE+ E
Sbjct: 85 NRIEKREVLKRRFEIKKK-LKTAKKKEKKEKKKKQE 119
>Z82901-1|CAI42864.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 899 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 941
>BC063692-1|AAH63692.1| 398|Homo sapiens THOC2 protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 139 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 181
>AL030996-3|CAI42271.2| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 899 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 941
>AL023575-1|CAO03594.1| 1593|Homo sapiens THO complex 2 protein.
Length = 1593
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 899 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 941
>AK023659-1|BAB14630.1| 650|Homo sapiens protein ( Homo sapiens
cDNA FLJ13597 fis, clone PLACE1009798, weakly similar to
RLR1 PROTEIN. ).
Length = 650
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 272 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 314
>AF441770-1|AAM28436.1| 1478|Homo sapiens Tho2 protein.
Length = 1478
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/44 (31%), Positives = 30/44 (68%)
Frame = -2
Query: 251 HQNRLSKKEAKLREIEAKEKVIRDAKLKEEKERASALEIKALEE 120
++ ++K + +++ I+ +++ + K K+EKER +AL+ K LEE
Sbjct: 784 YEREVNKLKVQMKAIDDNQEMPPNKK-KKEKERCTALQDKLLEE 826
>X98260-1|CAA66913.1| 582|Homo sapiens M-phase phosphoprotein 11
protein.
Length = 582
Score = 29.1 bits (62), Expect = 6.7
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = -2
Query: 236 SKKEAKLREIEAKEK-------VIRDAKLKEEKE-RASALEIKALEEMASGTAKK*KDKI 81
+K EAK +E EAKEK R AK KEE+E R AL K +++ KK + K+
Sbjct: 311 AKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKL 370
>D86970-1|BAA13206.2| 2067|Homo sapiens KIAA0216 protein.
Length = 2067
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -2
Query: 170 KEEKERASALEIKALEEMA 114
KE+KER SA E+++LEEM+
Sbjct: 35 KEKKERMSAAELRSLEEMS 53
>BC139751-1|AAI39752.1| 620|Homo sapiens ZRF1 protein protein.
Length = 620
Score = 29.1 bits (62), Expect = 6.7
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Frame = -2
Query: 236 SKKEAKLREIEAKEK-------VIRDAKLKEEKE-RASALEIKALEEMASGTAKK*KDKI 81
+K EAK +E EAKEK R AK KEE+E R AL K +++ KK + K+
Sbjct: 296 AKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEVRQQALLAKKEKDIQKKAIKKERQKL 355
>BC039612-1|AAH39612.1| 2002|Homo sapiens MYO18A protein protein.
Length = 2002
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -2
Query: 170 KEEKERASALEIKALEEMA 114
KE+KER SA E+++LEEM+
Sbjct: 22 KEKKERMSAAELRSLEEMS 40
>AJ417790-1|CAD10507.1| 1791|Homo sapiens voltage-gated sodium
channel protein.
Length = 1791
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 212 EIEAKEKVIRDAK--LKEEKERASALEI 135
EIEAKEK+ ++A+ LKEEKE A+ I
Sbjct: 413 EIEAKEKMFQEAQQLLKEEKEALVAMGI 440
>AF188679-1|AAF17480.1| 1791|Homo sapiens voltage-gated sodium
channel type XI alpha subunit protein.
Length = 1791
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 212 EIEAKEKVIRDAK--LKEEKERASALEI 135
EIEAKEK+ ++A+ LKEEKE A+ I
Sbjct: 413 EIEAKEKMFQEAQQLLKEEKEALVAMGI 440
>AF150882-1|AAF24980.1| 1444|Homo sapiens voltage-gated sodium
channel alpha subunit, alternate splice variant SCN12A-s
protein.
Length = 1444
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 212 EIEAKEKVIRDAK--LKEEKERASALEI 135
EIEAKEK+ ++A+ LKEEKE A+ I
Sbjct: 413 EIEAKEKMFQEAQQLLKEEKEALVAMGI 440
>AF109737-1|AAF24976.1| 1791|Homo sapiens voltage-gated sodium
channel alpha subunit SCN12A protein.
Length = 1791
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Frame = -2
Query: 212 EIEAKEKVIRDAK--LKEEKERASALEI 135
EIEAKEK+ ++A+ LKEEKE A+ I
Sbjct: 413 EIEAKEKMFQEAQQLLKEEKEALVAMGI 440
>AB177858-1|BAD66836.1| 2046|Homo sapiens KIAA0216 splice variant 1
protein.
Length = 2046
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = -2
Query: 170 KEEKERASALEIKALEEMA 114
KE+KER SA E+++LEEM+
Sbjct: 14 KEKKERMSAAELRSLEEMS 32
>X14684-1|CAA32815.1| 296|Homo sapiens La 4.1 protein protein.
Length = 296
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 83 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 121
>X13697-1|CAA31985.1| 408|Homo sapiens protein ( Human mRNA for
ribonucleoprotein SS-B/La. ).
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>M20328-1|AAA36577.1| 355|Homo sapiens protein ( Human
ribonucleoprotein (La) mRNA, 3' end. ).
Length = 355
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 142 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 180
>J04205-1|AAA51885.1| 408|Homo sapiens La protein protein.
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>BT009862-1|AAP88864.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>BC130385-1|AAI30386.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC107891-1|AAI07892.1| 291|Homo sapiens SMC2 protein protein.
Length = 291
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC071750-1|AAH71750.1| 356|Homo sapiens SMC2 protein protein.
Length = 356
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC055081-1|AAH55081.1| 209|Homo sapiens SMC2 protein protein.
Length = 209
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 37 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 82
>BC032705-1|AAH32705.1| 781|Homo sapiens SMC2 protein protein.
Length = 781
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC032639-1|AAH32639.1| 1220|Homo sapiens eukaryotic translation
initiation factor 5B protein.
Length = 1220
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 368 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 402
>BC020818-1|AAH20818.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>BC017845-1|AAH17845.1| 289|Homo sapiens Unknown (protein for
IMAGE:4699860) protein.
Length = 289
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC003396-1|AAH03396.1| 289|Homo sapiens Unknown (protein for
IMAGE:3448562) protein.
Length = 289
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>BC001289-1|AAH01289.1| 408|Homo sapiens Sjogren syndrome antigen B
(autoantigen La) protein.
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>AY739716-1|AAW65985.1| 760|Homo sapiens chromosome-associated
protein E protein.
Length = 760
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>AL354938-1|CAI16923.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>AL161791-2|CAI16867.1| 145|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 145
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 37 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 82
>AL161791-1|CAI16866.1| 1197|Homo sapiens structural maintenance of
chromosomes 2 protein.
Length = 1197
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>AL133563-1|CAB63717.1| 1132|Homo sapiens hypothetical protein
protein.
Length = 1132
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 280 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 314
>AJ006776-1|CAB44357.1| 1220|Homo sapiens IF2 protein protein.
Length = 1220
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 368 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 402
>AF092563-1|AAC72360.1| 1197|Homo sapiens chromosome-associated
protein-E protein.
Length = 1197
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 248 QNRLSKKEAKLREIEA-KEKVIRDAKLKEEKERASALEI-KALEEM 117
Q + KKEAKL+EI+ E+ I K ++ER+S LE K + E+
Sbjct: 182 QKTIEKKEAKLKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREI 227
>AF078035-1|AAD16006.1| 1220|Homo sapiens translation initiation
factor IF2 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 368 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 402
>AC079447-4|AAX93258.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 368 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 402
>AC009967-1|AAY14868.1| 408|Homo sapiens unknown protein.
Length = 408
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 248 QNRLSKKEAKLR---EIEAKEKVIRDAKLKEEKERASAL 141
+ + +K EAKLR E EAK+K+ DA++K +E+ L
Sbjct: 195 ERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCL 233
>AB018284-1|BAA34461.2| 1222|Homo sapiens KIAA0741 protein protein.
Length = 1222
Score = 28.7 bits (61), Expect = 8.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 242 RLSKKEAKLREIEAKEKVIRDAKLKEEKERASALE 138
RL + EAK +E E E+ R+ K ++EKER L+
Sbjct: 370 RLEELEAKRKEEERLEQEKRERKKQKEKERKERLK 404
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,077,506
Number of Sequences: 237096
Number of extensions: 844614
Number of successful extensions: 3015
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 2790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3013
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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