Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_B01
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   3.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 424 ELTELDFSKKYRTRIVLQYS 365
           EL +LD S  Y T   ++YS
Sbjct: 177 ELPQLDISNNYTTDCTIEYS 196


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 364 NYITKCQIYHTELLCVYRL*SSLDVGPSSP 275
           N  TKC     + LC Y L   + V P +P
Sbjct: 441 NSKTKCCFAQDDGLCPYTLKHKIRVPPGTP 470


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 42 GKKYRQISLLTYNYFIF 92
          GK +   S +  NYFIF
Sbjct: 8  GKNFPSTSFILINYFIF 24


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 278 TVGVLYGAFHQNRLSKKEAKLREIEAKEKVIRDAKLKEEKER 153
           T G  + + H +R  +  ++ R  E KEK  R  KL  EKE+
Sbjct: 221 THGFQHTSSHYSR-ERSCSRDRNREYKEKDRRYEKLHNEKEK 261


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 224 AKLREIEAKEKVIRDAKLKEEKER 153
           +K R  E KEK  R  KL  EKE+
Sbjct: 5   SKDRNREYKEKDRRYEKLYNEKEK 28


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 340  KSDILLYNCYTVKQFLYDTFWKNLI 414
            ++D   Y+CY    F +DT    LI
Sbjct: 1338 RTDAGEYSCYVENTFGHDTVTHQLI 1362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 246  EQAIKERSETTRD*SQREGHPRCQAEGGERKSL 148
            E + ++ ++  R   +RE H   Q E  +RK+L
Sbjct: 1411 EDSTRDSTKLDRSSREREVHNGGQQEDRDRKTL 1443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,529
Number of Sequences: 438
Number of extensions: 1989
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)