Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A18
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch...    29   1.0  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    27   2.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    26   5.4  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   7.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   7.2  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   9.5  

>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
           Crs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 229

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = -2

Query: 290 TVLFSTCRTSCVGI*LIDVCNVQ*PLLPTSDKLTH---CCWLERAYWAHYVCCP---VDN 129
           TV + +  T C+ I L+D C    P +PT+    +   C ++     + Y        +N
Sbjct: 98  TVGYVSMDTLCIAISLLDRCFTVKPTIPTTSFKIYAIGCLFIAFKLTSDYSVAKKSFCEN 157

Query: 128 DSPEIVYMNIPKYLYITYNANNFEVSVKTL 39
            +P +   N+ KY  I     NF++ V +L
Sbjct: 158 LAPSLSTKNLEKYEKIVLALLNFDIYVISL 187


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 726 ISCCVTSRLFKIL*ISIILCF*TF 655
           +SC +  RLF+IL +S ++ F TF
Sbjct: 199 LSCIIVHRLFQILTVSFVIGFTTF 222


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 66  ISVVGNIQILWNVHINNLRGIVIHRATHVVRPVRAFQPAAVS*LVRRWQQRLLHITN 236
           I +V NI I  +++      + +H      RP   F           WQQ +L ITN
Sbjct: 172 IGLVYNISITLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITN 228


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 152 SAPSTRVPTSSSELTCQT 205
           S PST +PTS+S ++ QT
Sbjct: 538 STPSTTIPTSNSSVSLQT 555


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 143 CPVDNDSPEIVYMNIPKYLYITYN 72
           CPV +  P   Y++   YLYI++N
Sbjct: 758 CPVTSAEPGTDYVDGSTYLYISFN 781


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +2

Query: 548 FNRNCSINVAAMQTERKLI*DSSHRRGTFYTIQCYVNVQK--QRIIEIHKILNRRE 709
           +N +CS+ ++  Q + K I  +        T++   N+    +RI  I K+LN+RE
Sbjct: 117 YNTSCSVLLSLYQRQLKKISTTIESYYLADTLRHNQNILNLCERIYNIQKLLNKRE 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,603
Number of Sequences: 5004
Number of extensions: 61166
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)