Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A18
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin...    29   5.1  
U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
           related protein 2 protein.
          Length = 1335

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 153 VRPVRAFQPAAVS*LVRRWQQRLLHI 230
           VRP  ++ P ++  LVRRWQ   L I
Sbjct: 863 VRPRSSYAPPSIEMLVRRWQDSCLEI 888


>U64857-3|AAM29666.1| 1487|Caenorhabditis elegans Hypothetical
           protein C37C3.6c protein.
          Length = 1487

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +2

Query: 71  RCR*YTNTLECSYKQSQGNRYPQGNTRSAPSTRVPTSSSELTCQ 202
           RC     T E + K SQG  YP        ST +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>U64857-2|AAC25867.1| 1558|Caenorhabditis elegans Hypothetical
           protein C37C3.6a protein.
          Length = 1558

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +2

Query: 71  RCR*YTNTLECSYKQSQGNRYPQGNTRSAPSTRVPTSSSELTCQ 202
           RC     T E + K SQG  YP        ST +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical
           protein C37C3.6b protein.
          Length = 2167

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = +2

Query: 71  RCR*YTNTLECSYKQSQGNRYPQGNTRSAPSTRVPTSSSELTCQ 202
           RC     T E + K SQG  YP        ST +PT +     Q
Sbjct: 539 RCNDTEETREVTCKDSQGRAYPLEKCLVDNSTEIPTDTRSCATQ 582


>Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical
           protein R12G8.2 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 94  SICILPTTLIISKYLLRRYIVNYTVFY 14
           + C +P TL+I + L + ++VN+T  Y
Sbjct: 304 AFCFVPVTLVILRDLGQMFLVNFTKLY 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,263
Number of Sequences: 27780
Number of extensions: 356453
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)