Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A16
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0588 - 26412487-26413887 31 0.73
11_01_0146 + 1224143-1224409,1224760-1224888,1225759-1225815,122... 29 2.9
07_01_0986 - 8314733-8314783,8315895-8318381 29 2.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 2.9
09_01_0097 - 1450544-1452058 29 3.9
02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668 29 5.1
02_02_0197 + 7689403-7691070 28 6.8
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 28 6.8
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 28 6.8
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 28 9.0
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 28 9.0
04_04_0938 - 29525604-29526182 28 9.0
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 28 9.0
>04_04_0588 - 26412487-26413887
Length = 466
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 588 GHTFIWSSPEVAASCHSCEKLPPISPDGAST 680
G T + SS AASC S PP +PD A+T
Sbjct: 284 GRTSVSSSAAAAASCSSSSLSPPETPDDANT 314
>11_01_0146 +
1224143-1224409,1224760-1224888,1225759-1225815,
1225903-1226201,1226474-1226565,1226946-1227160,
1227205-1227228,1227314-1227497,1227612-1227742
Length = 465
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 694 LKVHKVEAPSGDMGGSFSHEWQLAATSGEDQIKVCPSCSHAALLDHEGARCQSCG 530
+K ++AP SF+ W +G+D++ V S + A DHE R Q G
Sbjct: 310 VKALNLDAPCETNNCSFNGVWNGGGGAGQDELYVATSFYYMA-SDHEQGRLQQIG 363
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = +1
Query: 499 PLYFARFPRPSHSSGISLPHGPTAPRASRTDTLLSGLRQRSPRAATRVRSFLPYRPT 669
PL R P P H S S P P + A LLS +P A V S PT
Sbjct: 18 PLSILRTPTPRHLSSSSPPSQPPSSPAGELLRLLSAAPTWTPDLARAVSSTFSASPT 74
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 RFPRP-SHSSGISLPHGPTAPRASRTDTLLSGLRQRSPRAATRVRS 648
R +P S S + P PT PRA+R D L SG + R RS
Sbjct: 134 RLAKPLSSCSAAATPPAPTPPRAARHDVLGSGTANYGHGSIVRSRS 179
>09_01_0097 - 1450544-1452058
Length = 504
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 280 GSKEWNDHGMDQVKLVYDALNSVPALRSDVLVDDRHGL 167
G K W D G D +VY L S+ L S+ L + HGL
Sbjct: 288 GCKAWLD-GQDDRSVVYVNLGSLTVLSSEQLAEFLHGL 324
>02_04_0186 + 20754045-20754692,20754772-20755057,20756160-20756668
Length = 480
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 423 GGPEGGQYVASRASLYFVPRMNV*PTSILCKI 518
GGP G Q+ A FV N+ TSI+C I
Sbjct: 392 GGPGGSQFGKQIAGALFVTAWNIVITSIICVI 423
>02_02_0197 + 7689403-7691070
Length = 555
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 550 LPHGP-TAPRASRTDTLLSGLRQRSPRAATRVRSFLPYRPTELRLCALSSVGRGIDARXR 726
L H P A S D+ + LR SPR P E+R C + G+ R R
Sbjct: 60 LVHAPGDASYPSLLDSTIQNLRFASPRTPRPALVLTPVTADEVRACVVCCRAHGLTVRAR 119
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 178 RHGLTIGKRLLMADK-MGYPIVIACGKESSSNPPRYEMTIDGAT 50
+HG+ + K L++ADK + ++AC KE S R + TI AT
Sbjct: 474 KHGVILSKSLVVADKNLVEKAMVAC-KEKSKIVERTQATIVAAT 516
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 616 SGEDQIKVCPSCSHAALLDHEGARCQSCGKDAEILQSIEVGHTFILG-TKYSE 461
+G DQ + P A+ L+++ AR SCG + + E G F G KY +
Sbjct: 359 TGSDQAETVPKLVDASSLENKNARAVSCGARHSAIITDE-GEVFCWGWNKYGQ 410
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 740 RTDGNRXRASIPRPTLESAQSRSSVGRY-GRKLLTRVAARGDLWRRP 603
R G R A +PRPT S + S G Y G L +AA G R P
Sbjct: 199 RPTGPRPAAHVPRPTPPSPRKVSVSGSYVGLALYVVLAAAGTSSRGP 245
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -1
Query: 598 KVCPSCSHAALLDHEGAR---CQSCGK 527
+VC C+HAA + +G + CQ CGK
Sbjct: 191 RVCLRCAHAAAVMLDGVQKRYCQQCGK 217
>04_04_0938 - 29525604-29526182
Length = 192
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 592 CPSCSHAALLD-HEGARCQSCGKDAE 518
CPSC +L +G RCQ CG E
Sbjct: 146 CPSCRRILVLQLPQGERCQRCGARPE 171
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 684 TKSKLRRAIWEEASHTSGSSRRPLAKTR*KCVRPARTRRCWTMRERDARAVGRT 523
TK L A+ AS +SG P+ C++ R R C + E+ AVG+T
Sbjct: 142 TKQYLELAVAVLASSSSGDMMIPITS----CLKSLRLRDCIKISEKGLVAVGKT 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,124,902
Number of Sequences: 37544
Number of extensions: 609439
Number of successful extensions: 2182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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