Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A12
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 30 0.53
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 28 1.6
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 3.7
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.7
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.7
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 26 6.5
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 8.6
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 8.6
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 8.6
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 29.9 bits (64), Expect = 0.53
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 400 IICSNSSRTNLTYSDIYK 347
+ICS SS TN T+S++YK
Sbjct: 542 VICSVSSHTNFTFSNVYK 559
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 444 LVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSLI 286
L+P + G + P S + ++ + TL++++D+W W + L + LVS I
Sbjct: 128 LIPLSNG--MDDTPKSHLKVKILKVQETLSNSNDSWLWQRFSSLLLNCLVSSI 178
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.1 bits (57), Expect = 3.7
Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 6/148 (4%)
Frame = -2
Query: 909 LYRQFPXXXXXXXXXXXLPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIP 730
LYRQ P+ + ++QL L R +RY + + + + FL I
Sbjct: 496 LYRQSAVAEKSKRVKDTSPYTVTFSQQLWYCLARSWERYINDPAYIGSMAFAFLFQSLII 555
Query: 729 GSIFLSILSGFLFPF-----YFALVLVCCCSAIGASLCFFLSN-LLGKKLVRKFFPERAA 568
GSIF + + F F +L C ++ F ++ K + A
Sbjct: 556 GSIFYDMKLNTVDVFSRGGVLFFSILFCALQSLSEIANMFSQRPIIAKHRASALYHPAAD 615
Query: 567 EWSKAVAKHKDNLLNYIVFLRVTPFLPN 484
S + +N VF V FL N
Sbjct: 616 VISSLIVDLPFRFINISVFSIVLYFLTN 643
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 534 NLLNYIVFLRVTPFLPNWFI 475
N+LN++ LR+ PF P FI
Sbjct: 305 NILNHMTRLRIVPFAPGHFI 324
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 714 SILSGFLFPFYFALVLVCCCSAIGASLCFFLSNL 613
SI F+FPFY+ L+++ + IG S C S L
Sbjct: 10 SIFQFFVFPFYYFLLII---TEIGFSSCIQYSGL 40
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -2
Query: 846 LEDAKQLGLVLDRYKDRYFYEVLFGVFL-VYIFLQTFAIPGSIFLSILSGFLFPFYFALV 670
+ D Q+ L+ + ++ + V L +FL+ + GS+++ S ++ +++L
Sbjct: 286 IADIPQITLIFISFLFSFYVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLH 345
Query: 669 LVCCCSAIGASLCFFLSNLLGK 604
+ C+ A C +S+++ +
Sbjct: 346 FLWLCTFFHALQCAIISSIVSQ 367
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 626 SCQIFLERSLLENSSQKEQQSG 561
SC +F E+S +EN KE+ +G
Sbjct: 984 SCLVFQEKSEVENQRMKEELAG 1005
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 8.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 795 YFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 685
YFY V+ + +V + +F+I ++FL+ +G L PF
Sbjct: 183 YFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDPF 219
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 584 KNFLTSFFPRRFDKKKHRLAPIAEQQQTNTSAK*KGKR 697
K +LT F R+ +++KH + +Q++ A K R
Sbjct: 35 KEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLR 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,331
Number of Sequences: 5004
Number of extensions: 68447
Number of successful extensions: 224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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