Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A12
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496... 175 4e-44
02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983... 169 2e-42
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958... 154 1e-37
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275... 60 2e-09
01_06_1012 - 33806190-33807875,33807963-33808331 33 0.24
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229... 29 6.8
08_01_0010 + 80052-81419 28 9.0
>04_04_0989 -
29948834-29948995,29949083-29949253,29949369-29949639,
29950459-29950533,29950706-29950866
Length = 279
Score = 175 bits (426), Expect = 4e-44
Identities = 89/189 (47%), Positives = 124/189 (65%), Gaps = 1/189 (0%)
Frame = -2
Query: 816 LDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 637
L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF + LV ++ GAS
Sbjct: 82 LENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVVFAASAGAS 141
Query: 636 LCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPV 457
CFFLS L+GK LV +P++ + K VAK ++ LLNY++FLRVTP LPN FIN+++P+
Sbjct: 142 SCFFLSKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPI 201
Query: 456 IGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSLIPVF 277
+ VP F L T IG+ P S+V ++AG L LTS SD + SI +L + +VS+ P
Sbjct: 202 VDVPYHIFLLATLIGLIPASYVTVRAGIALGELTSLSDLYDTQSIALLFLIGIVSVTPTL 261
Query: 276 L-KDKLREK 253
L KD+ +EK
Sbjct: 262 LGKDEAQEK 270
>02_05_0383 -
28497525-28497689,28497776-28497946,28498115-28498385,
28499576-28499736
Length = 255
Score = 169 bits (412), Expect = 2e-42
Identities = 86/194 (44%), Positives = 125/194 (64%)
Frame = -2
Query: 855 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 676
P +L++ + L L+ Y Y +VL G VYIF+QTF IPG+IF+S+L+G LF
Sbjct: 44 PKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGG 103
Query: 675 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 496
+ LV + GAS C+FLS L+GK LV +P++ + K VAK ++ LLNY++FLRVTP
Sbjct: 104 VALVVFAATAGASSCYFLSKLIGKPLVFSLWPDKLGFFQKQVAKRREKLLNYMLFLRVTP 163
Query: 495 FLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITV 316
LPN FIN+++P++ VP F L TFIG+ P ++V ++AG L L+S SD + SI +
Sbjct: 164 TLPNTFINLASPIVDVPYHIFFLATFIGLIPAAYVTVRAGIALGDLSSLSDLYDKQSIAL 223
Query: 315 LSVFALVSLIPVFL 274
L + +VS+ P L
Sbjct: 224 LFLIGVVSVTPTLL 237
>03_05_0838 +
28093752-28094011,28095238-28095508,28095640-28095810,
28096238-28096369
Length = 277
Score = 154 bits (373), Expect = 1e-37
Identities = 75/197 (38%), Positives = 117/197 (59%)
Frame = -2
Query: 855 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 676
P L D + L L Y Y + G +YIF+QTF IPG+IF+S+L+G LF
Sbjct: 77 PRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKG 136
Query: 675 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 496
+LV + GAS C+F+S L+G+ L+ +PE+ + +AK K+ LLNY++FLR+TP
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITP 196
Query: 495 FLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITV 316
LPN FINM++P++ +P F T IG+ P S++ ++AG+ L L S + + ++ +
Sbjct: 197 TLPNTFINMASPIVDIPFHIFFAATLIGLIPASYITVKAGRALGDLRSLRELYDSKTLVI 256
Query: 315 LSVFALVSLIPVFLKDK 265
L + V++ P LK K
Sbjct: 257 LFLIGTVAVAPTILKRK 273
>07_03_1534 +
27526170-27526265,27527030-27527091,27527488-27527542,
27528168-27528266,27528346-27528432,27528951-27529067,
27529479-27529571,27529915-27529945,27530188-27530357
Length = 269
Score = 60.5 bits (140), Expect = 2e-09
Identities = 40/149 (26%), Positives = 67/149 (44%)
Frame = -2
Query: 765 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 586
L Y+ L A+P SI L++ G+LF V + IGA+ F L +G+ V
Sbjct: 55 LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYVLSK 113
Query: 585 FPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVA 406
+ + A+A + ++ LR+ P LP +N V V + + L +++G+
Sbjct: 114 CKDYPKFQAVAIAIERSG-FKIVLLLRLVPLLPFNMLNYLLSVTPVGIGEYMLASWLGMM 172
Query: 405 PPSFVAIQAGQTLHTLTSTSDAWSWTSIT 319
P + + G TL L+ + WS S T
Sbjct: 173 PITLALVYVGTTLKDLSDVTHGWSEISTT 201
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 33.5 bits (73), Expect = 0.24
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -2
Query: 762 VYIFLQTFAIPGSIFLSILS-GFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 586
V IF+ G++ L + + G + Y+ + C+ C LS+LL K ++ F
Sbjct: 329 VDIFITNLLFGGALCLEVYAIGMMLISYWTYAALQGCN------CRTLSHLLFKS-IKYF 381
Query: 585 FPERAAEWSKAVAKHKDNLLNYIVFLRVT 499
PE +WS +A+H NL++Y + R T
Sbjct: 382 RPESRPKWSNLMAQH--NLISYCLHDRAT 408
>01_06_1720 +
39421381-39421444,39422424-39422601,39422812-39422980,
39423101-39423170,39423259-39423487,39425130-39425340
Length = 306
Score = 28.7 bits (61), Expect = 6.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 379 CLNCYK*WWSHTNKCS*CK 435
C+NCY+ W++ + C C+
Sbjct: 230 CINCYRDWYTRSQSCPFCR 248
>08_01_0010 + 80052-81419
Length = 455
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 665 FVAVQQLVQVYVSSCQIFLERSLLENSSQKEQQSGQRQWQNTR 537
+V + LV + C I L E Q++QQ Q+QW R
Sbjct: 184 WVGLDGLVLAIAAVCFIVLVNGAGEEQEQRQQQQQQQQWWRRR 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,843,279
Number of Sequences: 37544
Number of extensions: 396491
Number of successful extensions: 1002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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