Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A12
(916 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical pr... 268 3e-72
Z77669-3|CAB01241.2| 259|Caenorhabditis elegans Hypothetical pr... 130 1e-30
AL023853-2|CAA19559.3| 253|Caenorhabditis elegans Hypothetical ... 128 4e-30
Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006664-1|AAF39902.2| 298|Caenorhabditis elegans Serpentine re... 29 3.5
AF024492-5|AAF98621.1| 334|Caenorhabditis elegans Serpentine re... 29 4.6
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.1
AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protei... 29 6.1
AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal chem... 29 6.1
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 29 6.1
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.1
U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal mem... 28 8.1
U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein ... 28 8.1
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.1
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 28 8.1
>Z47808-6|CAA87776.1| 246|Caenorhabditis elegans Hypothetical
protein D2013.10 protein.
Length = 246
Score = 268 bits (658), Expect = 3e-72
Identities = 122/217 (56%), Positives = 161/217 (74%)
Frame = -2
Query: 909 LYRQFPXXXXXXXXXXXLPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIP 730
+Y FP P +LEDAKQLG VL +YK+ + VL GV +VY+FLQ+FAIP
Sbjct: 28 VYSNFPEVSADEKVHLKYPRNLEDAKQLGRVLSKYKENNYSVVLCGVIVVYVFLQSFAIP 87
Query: 729 GSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAV 550
GSIFL+ILSG+LFPFY A+VLVC CSA GA++C+ +S L G+ V + FPER A+W +
Sbjct: 88 GSIFLTILSGYLFPFYVAIVLVCSCSATGAAICYTISKLFGRSFVLQKFPERIAKWQDDL 147
Query: 549 AKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQT 370
+KH+D+ LNY++FLRVTP +PNW IN+++PV+ VPL PF GTF+GVAPPSF+ IQAG T
Sbjct: 148 SKHRDDFLNYMIFLRVTPIVPNWLINIASPVLDVPLAPFFWGTFLGVAPPSFLYIQAGST 207
Query: 369 LHTLTSTSDAWSWTSITVLSVFALVSLIPVFLKDKLR 259
L L+ TS AWSW+SI +L+ A++SL P+ LK KL+
Sbjct: 208 LEQLSHTSVAWSWSSIVLLTGSAILSLAPILLKKKLK 244
>Z77669-3|CAB01241.2| 259|Caenorhabditis elegans Hypothetical
protein T07F10.4a protein.
Length = 259
Score = 130 bits (314), Expect = 1e-30
Identities = 56/173 (32%), Positives = 101/173 (58%)
Frame = -2
Query: 807 YKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCF 628
YK+ +F + Y++ QTFAIPGS L++++G ++ + +L CC + +G++LC+
Sbjct: 55 YKEDHFGYITTLFICAYLYKQTFAIPGSFLLNVIAGVVYDLWSGFILCCCLTTLGSTLCY 114
Query: 627 FLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGV 448
S L G++ V +F ++ + + + + LL +++F R+ P P+W +N+ AP + +
Sbjct: 115 MFSELFGREYVFYYFGQKLTYLQQKIDDNSNRLLPFLLFARMFPISPSWLLNIVAPFLNI 174
Query: 447 PLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSL 289
PL F + G+AP +F+ +QAG L L S D +S T++ L FAL+ L
Sbjct: 175 PLPIFVVSALFGLAPYNFICVQAGYILRDLRSWDDVFSTTTMLKLFSFALIPL 227
>AL023853-2|CAA19559.3| 253|Caenorhabditis elegans Hypothetical
protein Y71A12C.2 protein.
Length = 253
Score = 128 bits (310), Expect = 4e-30
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 1/202 (0%)
Frame = -2
Query: 855 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 676
P DLE ++L L +Y++ + + Y++ QTFAIPGS F+++L+G LF
Sbjct: 37 PRDLEGLRELSSSLTKYEESHAAYTVLLFSAAYLYKQTFAIPGSFFMNLLAGALFGTVRG 96
Query: 675 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 496
+ LVC +A+GASLCF LS L +V +F R V +D L +++ R+ P
Sbjct: 97 VALVCSLNAVGASLCFCLSALFAAPIVDRFLKSRIESLRCLVNAERDRLWFFLLSARIFP 156
Query: 495 FLPNWFINMSAPVIGVPLVPFALGTFIGVAPPSFVAIQAGQTLHTLTSTSDAWS-WTSIT 319
F P+W +N+S+P + VPL A F+G+ P + + ++AG L + S SD + WT
Sbjct: 157 FTPHWLLNISSPFLDVPLRYHASSVFVGLFPYNLLCVRAGTVLAEVNSMSDVFDVWTLSE 216
Query: 318 VLSVFALVSLIPVFLKDKLREK 253
+ SV L+ + K EK
Sbjct: 217 LFSVSLLLLVATRIAKQNSLEK 238
>Z82276-4|CAB05241.3| 327|Caenorhabditis elegans Hypothetical
protein K03D3.4 protein.
Length = 327
Score = 29.5 bits (63), Expect = 3.5
Identities = 39/133 (29%), Positives = 58/133 (43%)
Frame = -2
Query: 783 VLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGK 604
VLFG+F+ L T A I++S++ +FP V + I A + L +LL
Sbjct: 78 VLFGIFV----LCTLAEGLLIYISLI---IFPIGIVYVFI---EMIIADVFHLLISLLA- 126
Query: 603 KLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPVIGVPLVPFALG 424
+ KFF W K V + + YIVF+ +L M + VIG L P+
Sbjct: 127 --MEKFFIYFFPRWEKTVISIQKYIHKYIVFV----YLACCSRYMLSAVIGSSLEPYG-W 179
Query: 423 TFIGVAPPSFVAI 385
F+G F+ I
Sbjct: 180 KFLGPIVQHFLTI 192
>AC006664-1|AAF39902.2| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 40 protein.
Length = 298
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 520 IIEQIVLVFCHCL*PLCCSFWEEF 591
I++ +V FC + P C S W EF
Sbjct: 212 ILDAVVTFFCQFIPPFCVSIWPEF 235
>AF024492-5|AAF98621.1| 334|Caenorhabditis elegans Serpentine
receptor, class h protein129 protein.
Length = 334
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -2
Query: 795 YFYEVLFGVFLVYIFLQ--TFAIPGSIFLSILSGFLFP-FYFALVLVCCCSAIGASLCFF 625
+F+ L + + ++ + F +PG I L +LS P F A LV C + G S+ F
Sbjct: 56 HFWSSLLDITVCFLVIPYTIFPVPGGIPLGVLSIMSVPSFIQAFSLVVCGAFTGISILGF 115
Query: 624 LSN 616
N
Sbjct: 116 FKN 118
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = +2
Query: 365 CKVCPA*IATNDGGATPINVPNANGTKGTPITGADIFINQLGKKG 499
CK CPA A G A P ANG G P G D G KG
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP--GQDGQPGAPGNKG 187
>AJ277649-1|CAB90211.1| 917|Caenorhabditis elegans CHE-14 protein
protein.
Length = 917
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 418 YWCGSTIICSNSSRTNLTYSDIYK*CLVMDIYNSTQRFCTSFLDSSIFKRQT 263
Y C +C N TN +SD Y L + NST TS+ D+ IF +T
Sbjct: 641 YPCARGFLCCNM--TNPLFSDSY---LDFCLRNSTSFLATSYNDTPIFDNKT 687
>AF067618-5|AAC19198.2| 917|Caenorhabditis elegans Abnormal
chemotaxis protein 14 protein.
Length = 917
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 418 YWCGSTIICSNSSRTNLTYSDIYK*CLVMDIYNSTQRFCTSFLDSSIFKRQT 263
Y C +C N TN +SD Y L + NST TS+ D+ IF +T
Sbjct: 641 YPCARGFLCCNM--TNPLFSDSY---LDFCLRNSTSFLATSYNDTPIFDNKT 687
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 343 CLVMDIYNSTQRFCTSFLDSSIFKRQTSRKV*LIRIFI-LFMYCHALHSTKCWFGLXIN 170
C+V+ +N+ F S + + QT ++F +F C A + CWFG I+
Sbjct: 182 CIVLFHWNACLYFLFSLYEGITEESQTEFGFSYYKVFEPVFPTCQAYYDENCWFGEDID 240
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 365 CKVCPA*IATNDGGATPINVPNANGTKGTP 454
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 365 CKVCPA*IATNDGGATPINVPNANGTKGTP 454
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>U28928-8|AAA68340.1| 661|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 2 protein.
Length = 661
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 480 FINMSAPVIGVPLVPFALGTFIGVAPPSFV 391
+ N+S P++ V L F LGT +G + PS +
Sbjct: 207 YSNLSKPILDVFLYLFRLGTSLGFSSPSIL 236
>U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein 767
protein.
Length = 316
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 390 AIQAGQTLHTLTSTSDAWSWTSITVLSVFALVSLIPVFLKDKL 262
A+ A L+T+ +TSD + IT L+ LIP F++DK+
Sbjct: 253 AVFAKSALNTVGNTSDTTGY--ITHQLQLELMDLIPTFIRDKI 293
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 365 CKVCPA*IATNDGGATPINVPNANGTKGTP 454
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +2
Query: 365 CKVCPA*IATNDGGATPINVPNANGTKGTP 454
CK CPA A G A P ANG G P
Sbjct: 145 CKPCPAGPAGAPGPAGPAGDAGANGNPGAP 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,797,554
Number of Sequences: 27780
Number of extensions: 385786
Number of successful extensions: 1169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -