Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A10
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 77 2e-14
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799... 36 0.020
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 34 0.11
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 31 0.57
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 31 0.57
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 30 1.3
01_05_0380 - 21633505-21634563,21634626-21634677,21636263-216363... 29 3.0
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 28 5.3
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 28 5.3
05_06_0056 + 25246631-25246913,25247047-25247141,25247593-252476... 28 5.3
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 28 7.0
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 9.2
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 27 9.2
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 76.6 bits (180), Expect = 2e-14
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Frame = -3
Query: 514 GQEIKVEGATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFED-----LYTYM 350
G+ I + ++V PGHT H+ + + N L GD +G+G+A ++ + Y
Sbjct: 319 GENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDHCVGQGSATLDNRAGGNMKDYF 378
Query: 349 KSLQKILDLKPNIIYPGHGNIVKEPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEMDL 170
++ LD+ P+++ P HG I P + Y+ HR RE IL++++ N + L D+
Sbjct: 379 QTTYNFLDMSPHVLIPMHGRINLWPKHMLCGYLRHRRAREVSILQSIE-NGARTL--FDI 435
Query: 169 VKIIYTETPEHLWPAAAYNVNHHLTKLVKECKV 71
V Y + LW A++NV H+ L + K+
Sbjct: 436 VSKTYADVDRKLWIPASFNVRLHVDHLNSQNKL 468
>02_05_1316 -
35679456-35679538,35679660-35679722,35679824-35679938,
35680271-35680372,35680667-35680736,35681182-35681273,
35681542-35681622,35681697-35681740,35681829-35681976
Length = 265
Score = 36.3 bits (80), Expect = 0.020
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = -3
Query: 532 IEWLRDGQEIKVEGATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFEDLY-T 356
+EW G GA ++ HTPGHT + L LF+GD + + DL+
Sbjct: 153 VEWKLTGNGPWDIGADFELIHTPGHTEGSVCLFYKPVKALFTGDHVAKSEESDDLDLFLM 212
Query: 355 YMK--------SLQKILDLKPNIIYPGHG 293
Y K S++K+L L PGHG
Sbjct: 213 YSKQSVGLQLDSMRKLLKLDFEWFLPGHG 241
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = -3
Query: 493 GATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFEDLYTY-----------MK 347
GA ++ HTPGHT + L LF+GD + + +DLY + +
Sbjct: 220 GADFELIHTPGHTQGSVCLFYKPVKALFTGDHVAKSEES--DDLYLFLMYSRQPVSLQLD 277
Query: 346 SLQKILDLKPNIIYPGHG 293
S++K+L L PGHG
Sbjct: 278 SMRKLLKLDFEWFLPGHG 295
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 301 GHGNIVKEPVEKIEYYIAHRNQREEQIL-EALKTNSDKNLN---EMDLVKIIYTE 149
GH N+V++ + Y +H ++++Q E N+D LN E+D++K I E
Sbjct: 885 GHPNVVEKFSSALNQYDSHAPEKKDQCFQEGFMINTDDILNLQLELDIIKTILAE 939
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 169 VKIIYT-ETPEHLWPAAAYNVNHHLTKLVKECKVKCVNNDGEKRWQD 32
++ I+T T E W + YN HH +KLV C N E +W+D
Sbjct: 78 IRPIHTFSTVEDFW--SLYNNIHHPSKLVVGADFHCFKNKIEPKWED 122
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 286 VKEPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEM 176
+K PV IE+Y+ R+Q E+QI + +SDK L ++
Sbjct: 132 MKVPVAAIEFYLDTRSQIEDQIRGFSEPSSDKLLPDL 168
>01_05_0380 -
21633505-21634563,21634626-21634677,21636263-21636310,
21636349-21637289,21638737-21638982
Length = 781
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = -3
Query: 370 EDLYTYMKSLQKILDLKPNIIYPGH---GNIVKEPVEKIEYYIAHRNQREEQILEALKTN 200
++LY K +QK++ P+++ G GN + +K +A N + + +L A +
Sbjct: 444 QNLYLTYKQVQKLIAASPHVLIEGDPCLGNALLASKKK----MAEENLKAQPVLVATNDD 499
Query: 199 SDKNLNEMDLVKIIYTETPEHLWPAAAYNVNHHLTKLVKECK 74
+L E +L K E P A + +H T + K
Sbjct: 500 VQPSLQEPELSKENSEENPPSPRDTAPVSGHHDQTAKIGASK 541
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 490 ATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTA 377
+T V H HT D + C + +L SG CI+ G A
Sbjct: 564 STGDVSHK-SHTEDQVNAVCQKNVVLSSGTCIISNGFA 600
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -3
Query: 367 DLYTYMKSLQKILDLKPNIIYPGHGNIVKEPVEKI 263
D+Y++ L +++ +P II PGHG+IV+ +KI
Sbjct: 725 DVYSFGVVLLEVVTGEPPII-PGHGHIVQRVKQKI 758
>05_06_0056 +
25246631-25246913,25247047-25247141,25247593-25247629,
25248158-25248219,25248305-25248418,25249248-25249352,
25249441-25249539,25250203-25250359,25250473-25250579
Length = 352
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 298 HGNIVKEPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEMD 173
+ +K PV IE+Y+ R+ E+ I + SDK L ++D
Sbjct: 133 YSTAMKAPVAAIEFYMDVRHTIEDHIRGFAEPTSDKLLPDLD 174
>02_03_0390 +
18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -3
Query: 133 WPAAAYNVNHHLTKLVKECKVKCVNNDGEKR 41
WP HH K+ +E +C NN GE R
Sbjct: 422 WPFLEKRAAHHGIKMNEEIGFQCDNNQGECR 452
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = -2
Query: 428 GRKHFIQWRLHIRRGDSCV*RLIHLYEKSAKNIGLKTKHYLPWSWEYSKGTR*KN*ILYS 249
G K F+Q + + +S +L++L ++ K +KT+ + PW W G +
Sbjct: 1608 GIKWFLQGQDVLLGNNSVRQQLVNLTQR--KGFPMKTQFWKPWGWSKLVG------YANA 1659
Query: 248 SQKSKRRTNIRSFENK 201
++ SKR+ + S E +
Sbjct: 1660 NKSSKRKLEVTSIEER 1675
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = -3
Query: 472 HTPGHTTDHIVLTCLEENILFSGDCILGEGTA-VFEDLYTYM-KSLQKILDL--KPNIIY 305
HT GH + ++ E+ +F+GD + G FE M +SL L KP +Y
Sbjct: 123 HTKGHISYYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVY 182
Query: 304 PGHGNIVKEPVEKIEYYIAHRNQREEQILEALKTNSDKN 188
GH VK K + N++ +Q LE + + N
Sbjct: 183 CGHEYTVKN--LKFILTVEPDNEKVKQKLEWAQKQREAN 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,334
Number of Sequences: 37544
Number of extensions: 319344
Number of successful extensions: 778
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -