Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A08
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    28   9.3  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     28   9.3  

>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 506 NYILI--VFCHFLIHRLKLNPKQIGI 577
           NY +I  +FCHF+ + L LNP  IG+
Sbjct: 275 NYEIIPPIFCHFVENLLFLNPLPIGL 300


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -3

Query: 554 ILICV*ENDKKQLKCSFLNPLIRISSQSLTQNYVFRKNKYLLYNC 420
           + +C+ E+ +KQL  +  +P+I  ++++LT   V  +++    NC
Sbjct: 113 VALCMVEHLQKQLISNHSSPMIHKNARALTNRIVATRSELEFQNC 157


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -3

Query: 554 ILICV*ENDKKQLKCSFLNPLIRISSQSLTQNYVFRKNKYLLYNC 420
           + +C+ E+ +KQL  +  +P+I  ++++LT   V  +++    NC
Sbjct: 113 VALCMVEHLQKQLISNHSSPMIHKNARALTNRIVATRSELEFQNC 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,762
Number of Sequences: 27780
Number of extensions: 333422
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)