Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A08
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 533 FLIHRLKLNPKQIGIEFTKVRYENYRHN 616
           FL   L+L+PK I +   +V  +NY H+
Sbjct: 33  FLSTILRLDPKFIALHCQEVGGKNYEHS 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 162 NESLSPRRSS*CTIRNDIMVRLSQCEYLSARKSRQIKVIFTTYDSN 25
           N+ L P+  S  TIR +I+      +    R  R    +FT   +N
Sbjct: 814 NKRLDPKSDSRYTIREEILANGVLSDLSIKRTERSDSALFTCVATN 859


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 387 TDTKSKISFGPNINIIFLLFS 325
           TD++++ +FGP  N+ F +F+
Sbjct: 590 TDSQTEDNFGPLSNVRFAVFA 610


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,496
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)