Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A07
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    58   1e-09
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.3  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    28   1.7  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    27   4.0  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   7.0  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   9.2  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   9.2  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 3/172 (1%)
 Frame = -1

Query: 777 RXITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKE--LQS 604
           R  TLN  K  N+++++M++ ++  +   +E    + II+   G  FS+G ++K   L  
Sbjct: 67  RIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSI 126

Query: 603 SSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFS 427
             G + + +  F++   L  ++     PV+A +NG     G  L       +  + + F+
Sbjct: 127 QDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFA 186

Query: 426 TPGANFGIFCSTPGIALGRSVCKSKATYMLFTGEPINAQEAYESGLVTKVVP 271
            P    G F           +     TY+  T + +   +   +G+ T  VP
Sbjct: 187 MPETGIGYFTDVAASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHFVP 238


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = -1

Query: 684 DISLRAIIISAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMK-----SIILSPVPV 520
           D  L   ++SA  +  +A +N ++ +     DQ    F  AT L K     S++ S +  
Sbjct: 271 DALLSNQLLSADKHQLAASNNSQDFEDGKQYDQPPPSF--ATRLAKQSDPNSLLQSEIQH 328

Query: 519 IAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIALGRSV 364
           +A +    TA    LV    I      S  ++PG+NF     +P +A+ R +
Sbjct: 329 LASIESI-TAQAAPLVT---IHPFKSPSLSASPGSNFDNMSISPKVAVNRYI 376


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 534 SPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGA 415
           S + V  +V  F+TA    L+A+ D +    SS    PG+
Sbjct: 5   SSITVTVRVRPFSTAESANLIASSDRLSFGTSSSLRNPGS 44


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 291 LVTKVVPANELDNEVGKIIEKIKHKSRSVISMGKEFFYQQIELSLFNAYD 142
           LV  V    +LDN  GK+I KIK K+  V +      +Q+  L +   Y+
Sbjct: 327 LVDCVKTVQQLDN--GKLIAKIKWKNGYVSTHDNIIIHQKCPLKIIEYYE 374


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 714 LIEAINKNKEDISLRAIIISAKGNVFSAGHNLKEL 610
           L + +++ +ED SL  I  S K NVFS   N+ ++
Sbjct: 40  LPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDI 74


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 657 SAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVN 505
           + KGN+ SAG  L+     + +   +++F    +L+++  L  V  I   N
Sbjct: 254 NTKGNIHSAGSGLRRYNEQALIKDIQQVFKDWGKLLETCDLIFVRAIGSSN 304


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/54 (24%), Positives = 20/54 (37%)
 Frame = +1

Query: 307 FLCIYWFTREKHISCFRFTNRSSKSNSRCGTEYTKVCTRSGKLA*VRTYDYITG 468
           F C   F       CF+ T     S   C  +Y  +C + G  + ++  D   G
Sbjct: 172 FQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCG 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,236
Number of Sequences: 5004
Number of extensions: 59595
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)