Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A05
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    28   1.6  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    28   1.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   2.2  
SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    27   3.8  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   6.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   6.6  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -3

Query: 471  YLQPFPLKGTGYHRYVFVLYKQDKT---IDYALPKVTSSSALQDRTFVTREWYKKHQDNI 301
            YL   PL    Y RYV +L K+D+    +D  + K      L D       W  K  D+I
Sbjct: 1151 YLLSMPLWSLTYERYVELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAW-NKVMDDI 1209

Query: 300  TPIGLAFYQSDWDYSVRS 247
                L   QS  D+  R+
Sbjct: 1210 QREMLEEEQSSRDFVNRT 1227


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 353 KIVHLLLENGIKNIKIISHQL 291
           K +HL L  GI +IK+++HQL
Sbjct: 509 KRLHLKLSKGIMDIKVLTHQL 529


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 401 RQLIMLYQKLLRHQPFKIVH--LLLEN-GIKNIKIISHQLD 288
           R  I L+ KLL   PF ++H  LL  N   K + II  QL+
Sbjct: 415 RNAIKLFSKLLTTHPFSVMHNGLLTRNIWEKGLSIIEEQLN 455


>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 510 PGSAIEKGETLVEYLQPFPLKGTGYHRYVFVLYKQDKTIDYALPKV 373
           P     KGE L++ L P P +G        +L++ +  ++ AL ++
Sbjct: 225 PTKVFNKGEALIKVLDPIPTEGKTAEDVNDLLHETETAMNNALVEI 270


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 369 SSSALQDRTFVTREWYKKHQDNI 301
           SS AL D+T    EW K+HQD++
Sbjct: 101 SSPALIDKTL---EWLKEHQDDV 120


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 477 VEYLQPFPLKGTGYHRYVFVLYKQDKTIDYALPKVTSSSALQDRTFVTREWYK 319
           VEY Q FPL  T       ++ K +K +   LPK  S     D T +  E+YK
Sbjct: 171 VEYNQFFPLTITT------LIVKNNKNVVSNLPKNVSFYFHSDNTVLLNEYYK 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,648
Number of Sequences: 5004
Number of extensions: 64494
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)