Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_A01
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.077
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.3
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 28 1.7
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 27 2.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 3.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.8
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 26 6.7
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.8
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 25 8.8
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 32.3 bits (70), Expect = 0.077
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = -1
Query: 679 SXQELYKIFKIYGEEKKAAKIAQTILQARYMIKNIETTEELVDLVNSCCPDEIRLDKLQR 500
S + L+K+FKIYG +AQ +L+A Y T E+ +N+ + +R KL
Sbjct: 376 SKRNLWKVFKIYG------PLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVRGQKLHL 429
Query: 499 PQSNATKVFQ 470
S K +Q
Sbjct: 430 EISKIQKKYQ 439
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -1
Query: 694 VLATASXQELYKIFKIYGEEKKAAKIAQTILQARYMIKNIETTEELVDLVNSCCPDEIRL 515
V AS EL ++ I+ EE + + T+L YM+ N E+ + D+ + +++
Sbjct: 435 VSTDASLVELIEVL-IFNEELRIQTLLPTMLS--YMVNNYESVLLMEDVYETYLAEQVEN 491
Query: 514 DKLQR 500
D+L R
Sbjct: 492 DRLLR 496
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 292 PLRYLNPTLVQDKSTIEEFLDTPWRALNKHVDVPT 188
P YL+P + +ST E+ L+ PW+ H + T
Sbjct: 315 PSNYLSPNRAELESTPEQLLEVPWQHHQCHPLIKT 349
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/54 (20%), Positives = 26/54 (48%)
Frame = -1
Query: 718 PNQISAREVLATASXQELYKIFKIYGEEKKAAKIAQTILQARYMIKNIETTEEL 557
P++ S+R V+ + + E++ ++ QTI+ + +ETT+ +
Sbjct: 426 PSEFSSRPVIVICGEDAYTVAYIVEDEDESFTEVTQTIISQEVLDNELETTQTI 479
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 463 RIFVNNELNEINYGMVLSKYYLKINGRLV 377
++F E +E NY L+KYYLK+ V
Sbjct: 238 KLFQRPEKDEPNYRRKLNKYYLKVTSYYV 266
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -1
Query: 361 SLEDTI--VKRHIAGNIINEVANPVPLRYLNPTLVQDKSTIEEFLDTPWRALNKHVDVP- 191
+L+D I ++ + N N + L P LVQ+ I FL + RAL VD P
Sbjct: 158 NLQDHIDEFQKQLFSNFKRSNKNECRIAALVP-LVQESYGIYRFLTSMLRALYSTVDAPE 216
Query: 190 TDEEVESNPRSRSARLR 140
T E ++ +S+ RLR
Sbjct: 217 TLEPLKHRYKSQHHRLR 233
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = -1
Query: 745 DMRMDAGRDPNQISAREVLATASXQELYKIFKIYGEEKKAAKIAQTILQA--RYMI---K 581
D+R N++ + L QEL + + E+KK ++ Q+ LQ+ R ++ K
Sbjct: 466 DLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKK 525
Query: 580 NIETTEELVDLVNSCCPDEIRLDKLQRPQSNATKVFQALRIFVNNELNE 434
E E ++ + EI + Q + + + NNEL+E
Sbjct: 526 KHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVATNNELSE 574
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 540 ELTKSTNSSVVSIFLIIYRACNIVCAIFAAFFSSPYILNILYSSCXLAV 686
++ + ++ V F +++R IV I FF+S ++L + LAV
Sbjct: 40 QMFQMSSHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAV 88
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 674 TRTI*NIQNIWRRKESRENSTNYITS 597
T I NI+ +WR ++ ENS N T+
Sbjct: 218 TTPIHNIEKLWRDYDAFENSVNRATA 243
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +3
Query: 561 SSVVSIFLIIYRACNIVCAIFAAFFSSPYILNILYSSCXLAVAKTSL 701
SS +++F + + ++ AAF +PY+L+ L + ++ K+S+
Sbjct: 428 SSALAMFYVHGDTTDTRASMLAAFERAPYMLSELLDTLNISFTKSSI 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,795
Number of Sequences: 5004
Number of extensions: 52739
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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