Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_A01
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199...    82   4e-16
07_03_0595 + 19845631-19845972                                         29   5.3  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   5.3  
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451...    28   9.2  

>02_01_0298 +
           1998278-1998655,1998836-1999111,1999203-1999271,
           1999881-2000073,2000161-2000555
          Length = 436

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 2/207 (0%)
 Frame = -1

Query: 754 GYLDMRMDAGRDPNQISAREVLATASXQELYKIFKIYGEEKKAAKIAQTILQARYMIKNI 575
           G LDMRMD       + A ++L +    E+ +I + YGEE     + + I++AR M   +
Sbjct: 232 GPLDMRMDPKAT---LKAEDILNSWPDLEVGRILRDYGEESNWQSLQKRIVKARAM-GGL 287

Query: 574 ETTEELVDLVNSCCPDEIRLDKLQRPQSNATKVFQALRIFVNNELNEINYGMVLSKYYLK 395
            +T ELV L+   C         Q     AT+VFQALRI VN+EL  +   +      L 
Sbjct: 288 HSTGELVKLIQRTCTSS---GGRQGWIKTATRVFQALRIAVNDELRTLEDALHACFDCLA 344

Query: 394 INGRLVTISFHSLEDTIVKRHIAGNIINEVANPVPLRYLNPTL-VQDKSTIEEFLD-TPW 221
            +GRL  ISFHSLED IVK+     I  +  +      ++  +  +D+   ++ +     
Sbjct: 345 TDGRLAVISFHSLEDRIVKQTFLELIHEDEIDDDEDDLVSADIDSEDEPWFKQRVQGKNG 404

Query: 220 RALNKHVDVPTDEEVESNPRSRSARLR 140
             L K    P+ EE E N R RSA+LR
Sbjct: 405 TILTKRPISPSQEEEELNQRCRSAKLR 431


>07_03_0595 + 19845631-19845972
          Length = 113

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 733 DAGRDPNQISAREVLATASXQELYKIFKIYGEEKKAAKIAQTILQARYMIKNIE 572
           DAG+    +   E LA A+ +E  ++ K  GE+    KI  T  Q   +++ +E
Sbjct: 19  DAGKKKRAVLVEEELAAAAVEEEEEVRKQGGEKVTEVKIRITRKQLEELLRRLE 72


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
 Frame = -1

Query: 502  RPQSNATKVF---QALRIFVNNELNEINYGMVLSKYYLKINGRLVTISFHSLEDTIVKRH 332
            R Q + T+++    + R+ +++EL   N    L  +   I G   +I+F+S +   V   
Sbjct: 1287 RFQDHQTQIYLPDSSARLCLSSEL-VFNDAPWLLDFDEDITGNAPSIAFNSKK--YVHNF 1343

Query: 331  IAGNIINEVANPVPLRYLNPTLVQDKS-TIEEFLDTPWRALNKHVDVPT 188
            + GNI N+VA  + +R L   L+ + S ++   L     A  +H D+ T
Sbjct: 1344 VHGNISNDVAERLGVRSLRRLLLAESSDSMNLSLSGVAEAFGQHEDLTT 1392


>02_04_0121 -
           19943988-19944251,19944534-19944734,19944802-19945124,
           19945283-19945316,19945479-19945856,19946425-19946678,
           19946791-19946938,19947052-19947198,19947287-19947664
          Length = 708

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 735 WMPAGTLIKYLLEKSWLQ-QVXKNY-IKYSKYMEK 637
           W P G +I+++LE SW Q  + + Y + Y+ ++ K
Sbjct: 319 WHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAK 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,081
Number of Sequences: 37544
Number of extensions: 295186
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)