Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P21
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0436 - 17558603-17559265,17559322-17559384                       29   0.78 
06_01_1160 - 9868340-9868360,9868639-9868986                           26   7.2  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    26   9.6  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    26   9.6  

>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 211 NA*C*PTPRLGWQTSPPP 158
           NA   PTP L W+T+PPP
Sbjct: 174 NASATPTPSLSWRTTPPP 191


>06_01_1160 - 9868340-9868360,9868639-9868986
          Length = 122

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 43  RAXNQIFXHVAQQRHMRVICTPPSNK 120
           +A  Q+    A  R+MRVICT P+ K
Sbjct: 84  QAGRQVGRRPASIRNMRVICTTPNYK 109


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 103 TPPSNKVSXGEXIFLASLMVVGWSAIPAWVLVNIKHYR 216
           TPPS+  S G  I +  L+V+  + +   ++V  + YR
Sbjct: 205 TPPSSSSSIGSSIAIVVLVVITTAIVTVAIVVIRRSYR 242


>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 234 IILLLVAVMLDVDQHPGWDGRPAHHHQAGE 145
           +  +L+ ++LDV   P W    +    AGE
Sbjct: 320 LFAVLMTMLLDVQDEPAWHAAVSEEEDAGE 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,339,781
Number of Sequences: 37544
Number of extensions: 159709
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)