Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P21
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    27   5.0  
Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z68752-9|CAA92985.1| 1208|Caenorhabditis elegans Hypothetical protein
            K08E4.1 protein.
          Length = 1208

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 27   HSAFPSRXQPNLXSCRPTKAHARYLHSAKQQGFQX*XDLPRQP 155
            + + PSR  PN  S   T A+    HSA+   +    D+P  P
Sbjct: 922  YESMPSRT-PNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSP 963


>Z68316-8|CAA92685.1| 1208|Caenorhabditis elegans Hypothetical protein
            K08E4.1 protein.
          Length = 1208

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 27   HSAFPSRXQPNLXSCRPTKAHARYLHSAKQQGFQX*XDLPRQP 155
            + + PSR  PN  S   T A+    HSA+   +    D+P  P
Sbjct: 922  YESMPSRT-PNYDSSSKTPAYPESEHSARTPAYNNDYDIPLSP 963


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 37  FLRAXNQIFXHVAQQRHMRVICTPPSNKVSXGEXIFLASLMVVGWS-AIPAWVLVNIKH 210
           FL   N      A   H+ +    P N +S    + +AS M++ WS A+ A++  ++ H
Sbjct: 275 FLCGVNMAGWAAAGVNHVLIFEVDPRNHLSYQTLMQIASFMIMLWSFAVLAYLYAHMLH 333


>Z50739-2|CAA90602.2|  381|Caenorhabditis elegans Hypothetical
           protein F13D2.3 protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 IFLASLMVVGWSAIPAWVLVNIKHYRDKQ*NYHKKICSLFCSK 267
           I +AS + +    IP W    + HY D++    + +C++F SK
Sbjct: 225 ITIASYVRMMSRLIPFWPFTVLNHYEDER---QQTLCTIFWSK 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,421
Number of Sequences: 27780
Number of extensions: 122794
Number of successful extensions: 298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)