Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_P21
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 VCHPSLGVGQHQALPRQAIKLSQKNM 248
           +C P L +    A  +QA+++S  N+
Sbjct: 429 ICKPKLKIADLSAHDKQAVRMSALNV 454


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 175 QTSPPPSGWR 146
           +TSPPP  W+
Sbjct: 413 RTSPPPEDWK 422


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 123 NLVAWRSADNAHVPLLGDMXKDLVVSA 43
           N+    SAD+  V ++    +D +VSA
Sbjct: 375 NISPRSSADSCQVGIMAQRHRDTIVSA 401


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 169 WSAIPAWVLVNI 204
           W+A+PA V++ +
Sbjct: 326 WNAVPARVMIGV 337


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 169 WSAIPAWVLVNI 204
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 169 WSAIPAWVLVNI 204
           W+A+PA V++ +
Sbjct: 346 WNAVPARVMIGV 357


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +1

Query: 169 WSAIPAWVLVNI 204
           W+A+PA V++ +
Sbjct: 295 WNAVPARVMIGV 306


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,998
Number of Sequences: 438
Number of extensions: 1887
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)